Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0554 ATGGATATCTTCACTGCATTTGTCTTCCTCACTCTTGTGGTTTCAACCACCAAAGCTTTTGATCCCTGTGCTTCCCCTTCTTCGGAATCCAAGGGCTCGGATCTTTCGGTGATCCATGTGTATGGCCAATGCTCTCCCTTCAACCAGCACAAGGCTGGGTCCTGGGTGAACACCGTCATCAACATGGCCTCAAAAGACCCAGCACGCGTCACCTACTTGTCCAGCCTAGTTGCATCCCCCAAGGCCACCTCTGTCCCAATTGCGTCTGGGCAACAGGTCCTCAACATTGGCAACTACGTGGTGCGAGTCAAACTGGGCACTCCCGGTCAGCTTATGTTCATGGTTCTTGACACCAGCAGAGACGCCGCATGGGTCCCATGCGCCGACTGCGCCGGCTGCTCCTCCCCCACCTTCTCCCCCAACACTTCTTCCACTTACGCTTCACTCCAATGCTCTGTGCCCCAGTGCACCCAGGTCCGTGGCCTCTCGTGCCCCACCACGGGTACTGCTGCATGCTTCTTCAACCAAACCTATGGGGGAGATTCCTCCTTCTCCGCCATGCTCTCACAGGATTCTCTCGGCTTGGCGGTTGACACTCTTCCCAGCTACTCTTTCGGCTGCGTCAACGCTGTCTCCGGCTCGACCCTTCCGCCGCAGGGGCTCCTGGGGCTGGGTCGTGGGCCCATGTCGTTGCTCTCACAATCCGGGTCTCTATACTCTGGTGTCTTCTCCTACTGTTTTCCCAGTTTCAAATCATACTACTTCTCTGGCTCCTTACGCCTCGGACCCCTGGGTCAACCCAAGAACATCAGAACCACCCCACTCCTCCGAAACCCGCACCGACCCACTCTCTACTACGTCAACCTAACCGGAGTCAGCGTCGGCCGAGTTTTGGTGCCGGTGGCGCCAGAGCTACTGGCATTTGACCCAAACACCGGCGCCGGTACCATAATTGACTCAGGTACAGTCATAACTCGGTTCGTGGAACCAGTATACGCGGCCATCAGGGACGAATTCAGGAAGCAGGTGAAAGGACCATTTGCAACGATAGGGGCATTCGATACGTGTTTCGCAGCAACAAATGAGGACATAGCACCCCCGGTAACGTTCCATTTCACAGGAATGGACCTGAAGTTGCCGCTGGAGAACACACTGATACACAGCAGCGCAGGGTCGTTGGCATGCTTGGCAATGGCAGCAGCGCCCAACAACGTCAACTCGGTGCTGAACGTTATAGCGAATCTACAGCAGCAGAATCTTAGGATTATGTTTGATGTCACCAACTCTCGTCTGGGAATTGCTCGTGAGCTGTGTAACTAG 1320 0.5538 MDIFTAFVFLTLVVSTTKAFDPCASPSSESKGSDLSVIHVYGQCSPFNQHKAGSWVNTVINMASKDPARVTYLSSLVASPKATSVPIASGQQVLNIGNYVVRVKLGTPGQLMFMVLDTSRDAAWVPCADCAGCSSPTFSPNTSSTYASLQCSVPQCTQVRGLSCPTTGTAACFFNQTYGGDSSFSAMLSQDSLGLAVDTLPSYSFGCVNAVSGSTLPPQGLLGLGRGPMSLLSQSGSLYSGVFSYCFPSFKSYYFSGSLRLGPLGQPKNIRTTPLLRNPHRPTLYYVNLTGVSVGRVLVPVAPELLAFDPNTGAGTIIDSGTVITRFVEPVYAAIRDEFRKQVKGPFATIGAFDTCFAATNEDIAPPVTFHFTGMDLKLPLENTLIHSSAGSLACLAMAAAPNNVNSVLNVIANLQQQNLRIMFDVTNSRLGIARELCN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0554 439 FunFam aspartyl protease AED3 77 262 - -
Vvi18g0554 439 ProSiteProfiles Peptidase family A1 domain profile. 99 434 IPR033121 -
Vvi18g0554 439 FunFam Aspartyl protease AED3 263 439 - -
Vvi18g0554 439 Gene3D Acid Proteases 73 262 IPR021109 -
Vvi18g0554 439 Pfam Xylanase inhibitor C-terminal 285 434 IPR032799 -
Vvi18g0554 439 Pfam Xylanase inhibitor N-terminal 99 262 IPR032861 -
Vvi18g0554 439 SUPERFAMILY Acid proteases 95 438 IPR021109 -
Vvi18g0554 439 Gene3D Acid Proteases 264 439 IPR021109 -
Vvi18g0554 439 PANTHER ASPARTYL PROTEASES 21 432 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0554 Vvi-Chr18 5617417 5618736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0554 96 439 Miscellaneous Gene Families AT1G77480 25.916 3.39e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0554 - - vvi:100252287 854.744