Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0552 ATGGGACTCAAGGGTTTCGTTGAAGGCGGCATTGCTTCCATTGTGGCTGGATGCTCCACCCACCCACTCGATCTCATTAAGGTCCGTATGCAGCTACAGGGTGAATCCCATGTTCCCAACCAAGCCATTCACAATCTGAGGCCCGCTTTCGCTTTCAACTCCGCTTCTGCCACCATGGTCGGAGCTCCGTCTACGGTTCACATCCCGCCGCCTCCTCGGGTGGGTCCCGTGTCCGTGGGGGTTAAGATCGTCCAGGCCGAAGGAGTCTCCGCCCTCTTCTCCGGCGTGTCGGCCACCGTGCTGCGACAGACGCTCTACTCCACCACTCGCATGGGTCTATACGACGTTCTCAAGCAAAAATGGTCCGATCCAGATTCAGGCAACATGCCCCTCGTGCGCAAGATAGCAGCGGGGCTAGTCGCAGGCGGCATCGGCGCCGCCGTCGGCAACCCGGCCGACGTCGCCATGGTCCGTATGCAAGCTGACGGTCGCCTGCCGGTAACCCAGCGTCGAAACTACCAGGGCGTGATTGACGCCATAACGCGGATGTCTAAGCAGGAGGGGATCGCCAGTCTGTGGCGAGGGTCGGCACTGACGGTGAACCGCGCGATGATCGTGACGGCATCGCAGCTAGCATCGTACGACCAGATAAAGGAGACAATATTGGAGAAGGGTGTGATGAAAGATGGGTTGGGAACCCACGTGACGGCTAGCTTTGCGGCGGGATTTGTGGCAGCAGTGGCGTCGAACCCAGTGGATGTAATAAAGACGAGGGTGATGAACATGAAGGTTGAGCCCGGAACGGCTCCCCCTTATTCCGGAGCGCTAGATTGCGCAATGAAGACAGTGCGCGCTGAAGGACCCATGGCCCTTTACAAGGGCTTCATTCCTACTATCTCGAGGCAGGGACCTTTCACTGTTGTGTTGTTTGTGACCCTTGAGCAGGTCAGGAAGATTCTCAAGGACTTCTAA 972 0.5792 MGLKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGESHVPNQAIHNLRPAFAFNSASATMVGAPSTVHIPPPPRVGPVSVGVKIVQAEGVSALFSGVSATVLRQTLYSTTRMGLYDVLKQKWSDPDSGNMPLVRKIAAGLVAGGIGAAVGNPADVAMVRMQADGRLPVTQRRNYQGVIDAITRMSKQEGIASLWRGSALTVNRAMIVTASQLASYDQIKETILEKGVMKDGLGTHVTASFAAGFVAAVASNPVDVIKTRVMNMKVEPGTAPPYSGALDCAMKTVRAEGPMALYKGFIPTISRQGPFTVVLFVTLEQVRKILKDF* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0552 323 PRINTS Mitochondrial brown fat uncoupling protein signature 308 323 IPR002030 GO:0006839|GO:0031966
Vvi18g0552 323 PRINTS Mitochondrial brown fat uncoupling protein signature 183 200 IPR002030 GO:0006839|GO:0031966
Vvi18g0552 323 PRINTS Mitochondrial brown fat uncoupling protein signature 114 126 IPR002030 GO:0006839|GO:0031966
Vvi18g0552 323 PRINTS Mitochondrial brown fat uncoupling protein signature 226 244 IPR002030 GO:0006839|GO:0031966
Vvi18g0552 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 129 220 IPR018108 -
Vvi18g0552 323 SUPERFAMILY Mitochondrial carrier 4 316 IPR023395 -
Vvi18g0552 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 120 IPR018108 -
Vvi18g0552 323 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 4 319 - -
Vvi18g0552 323 Gene3D Mitochondrial carrier domain 4 322 IPR023395 -
Vvi18g0552 323 FunFam Mitochondrial uncoupling protein 5 4 323 - -
Vvi18g0552 323 ProSiteProfiles Solute carrier (Solcar) repeat profile. 229 319 IPR018108 -
Vvi18g0552 323 Pfam Mitochondrial carrier protein 5 120 IPR018108 -
Vvi18g0552 323 Pfam Mitochondrial carrier protein 129 223 IPR018108 -
Vvi18g0552 323 Pfam Mitochondrial carrier protein 232 321 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0552 Vvi-Chr18 5605518 5606489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0552 1 322 Miscellaneous Gene Families AT5G09470 60.177 2.34e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0552 K15104 - vvi:100245527 602.823