Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0551 ATGCAGACTCCTCACATGGAGATGGCGGCGCTCCTCTTTGCCAACCTGCCCAGCCTGATCAAATGCGTTCTCGTGCAGGCAATATGTGGGTTGTATTCCTTTAATAATTCAGGTTGGCTTTTCAAACTTCTGTGGTATGGAGCCTATTGTTTGATTTCTTCAGCCTCTTGTTTTTATGATATTGGTTTACAAGAAATAGCAAAATTAACACTTTCTAAGATTCACGTTACTTTGCAGGTTTTCAAGAGTGGACCACTTTTTATATCATCAAAAGGAATTGGATGGACATCATGGAAGAAAAGGTGGTTTATTTTAACACGTACATCGTTGGTTTTCTTTAGAAGTGATCCAAGTGCTATTCCTCAAAAGGGTAGTGAGGTGAATTTGACCCTTGGTGGTATTGACCTCAACAATTCAGGCAGTGTGGATGTCAAAGCAGATAAAAAACTCTTGACTGTGCTCTTTCCTGATGGTCGTGATGGGCGAGCTTTCACACTCAAGGCTGAAACTTTAGAGGATCTATATGAGTGGAAGGCTGCACTTGAAAATGCTTTATCACAGGCACCAAGTGCTGCCTTGGTGATGGGGCAAAATGGAGTCCTCAAGAATGATCAGGCTGAGGCAGTTGATGGTTCTACTGAACAGTTGAAGGATAAGTTGCCTGCGAAGTCCTCGGTCCTTGGTAGGCCAATTTTACTTGCTTTGGAAGATGCTGATGGTACTCCTTCTTTCTTGGAAAAGGCCCTTAGATTTATAGAAGAACATGGAGTCAAAATAGAAGGGATCTTGCGACAAGCTGCAGATGTCGATGATGTTGAATGTCGAATTCGGGAATATGAAAAAGGAAAAAATGAATTTTCTCCAGATGAGGATCCGCATATCATCGCTGATTGCGTCAAGTATGTCCTCCGGGAGTTACCATCATCTCCAGTTCCTGCATCTTGCTGCAACGCATTATTAGAAGCATGTCGAACTGATCGTAACAATAGAGTCAATGCTATGCGTGGTGCAATATGTGAAACATTCCCAGAGCCTAATCGCCGCCTATTGCAAAGAATTCTAATGATGATGCAAACTGTGGCTTCTCACAAAGCTGAGAATCGAATGAGCTCTTCAGCTGTGTCTGCTTGCATGGCACCTTTACTTCTTCGTCCCCTTTTGGCTGGTGATTGCGAGCTTGAAAATGATTTTGATGTGGGTGGGGATGGTTCTGCTCAGCTTCTGCAAGCAGCTGCTGCTGCTAACCATGCTCAAGCTATTGTCATAACTCTCCTAGAGGAGTATAATAATATGTTTGGGGAGGCGTCCATGTCTGCTGACCTATACACTGATTCAGAAGAGAGTGGATGTGAGACTGAGGAGCAAACTGATGATGATGACGATGATGACGATGATGATGAGATCCTGGAAGATGATGGATATGATGATGTAACAGAAGACCCTGATGCAGATACAGATGATGATCTGGAACATTCATCAAATGGAACCTGCAGTGAAAGTGGTAACAATGGAGATGATGATCTTTGTGATGGTTTTGAAGCCAATCAGAAGTTGTCATCAAGTCCACCCCAAATTTCATTGCTTCATCAGGAGAATGTAGAAAATAGTGGCAAATTTCAGACTCAAAGTAATAGTTGTTCAGCAATGCAGGGTAGTTATTCTGGCGAACAATTAGAAGAAGTTCCTGTAGAAGCTAGCTCCATACATAAGCTAGCTGGCCAGCGTTCATCCCCTCATATTAAAAAATCTACGACTATAGCAAGTGGACCAATGAATAAGCGCCCTACTGTTTGGGGCCGTACCCCTTCTAAAGAGAATGCAGTACTGCAAGCAAGTTTGGAAAGAAGAAAAAGGGACTTGCATGAGCATCGCCAAGCACTTGAGCAAGATGTGGCAAGGCTACAGGAACAATTGCAAAAGGAGAGAGATTTGAGGACAGCTCTGGAAGCTGGACTTAATATGTCTCAGGGTCCATTACCTATCTCAGCCACTATTGATGGAAAGGTGAAGGCAGAGCTTGAGGAAGTTGCTCTTACAGAGGCAGATGTCATTAATTTAAAGCAGAGGGTTGATGATCTTAGTGCTCAGCTTAATCAACAATGTGAGGTAAACTGTGGTCCTATGCATGATTCATGCAGTGAGCCCCAAAGAACACAGAACCATCAAGCAAAACTGAAGGATAAACAGAAGGATGTGGAAACTACATCTACTTCACATCTTCATGAAAAGTCAACAAGAAATAAGGTGCAACAGGATGCTTGTATGGATGGAGCAGACCGTGAGAACAAGAAACATGAAAGCAAAAATCCTCTTCAGAACCAGCAGCTGGACCCAGTACGTAGCAGCTGCAGCTCCAAGTTTGTTGGTGCTCAGGCCACTTCATCTGCTGCAGACCCTGCAGTAGGCAGGTCCAATAGTCATTCCAATTCGAAGAAGTCGGGTACAAGGAATGAGGGATCCAATTCTACAACTTCTGCACTGTCCAAGCTGACAACCCGACTCAACTTCTTAAAGGAGAGGCGTACTCAGATAGCAAATGAGATCCAAAATATGGACAAAGGCAGAAGTTCAAGTTCATGTTCAAGTTCAAATCAAGCTGCTCAAAACCCGGAAAGGGGCAGAGGATCTGAAGGTCGCCAACCAGTCCAAAATATGGACAAGTCTCAAGCCTCTGAAGTTCAATCCCTCCAAAATACGGAGAAAGGTAAGGGACCGGACTGCAGCCAATCTCTCCAAAATCAGGACAAGCCTAGGAAATCAGATGCTCAACCACAGCAAAAACCAGGATAG 2790 0.4376 MQTPHMEMAALLFANLPSLIKCVLVQAICGLYSFNNSGWLFKLLWYGAYCLISSASCFYDIGLQEIAKLTLSKIHVTLQVFKSGPLFISSKGIGWTSWKKRWFILTRTSLVFFRSDPSAIPQKGSEVNLTLGGIDLNNSGSVDVKADKKLLTVLFPDGRDGRAFTLKAETLEDLYEWKAALENALSQAPSAALVMGQNGVLKNDQAEAVDGSTEQLKDKLPAKSSVLGRPILLALEDADGTPSFLEKALRFIEEHGVKIEGILRQAADVDDVECRIREYEKGKNEFSPDEDPHIIADCVKYVLRELPSSPVPASCCNALLEACRTDRNNRVNAMRGAICETFPEPNRRLLQRILMMMQTVASHKAENRMSSSAVSACMAPLLLRPLLAGDCELENDFDVGGDGSAQLLQAAAAANHAQAIVITLLEEYNNMFGEASMSADLYTDSEESGCETEEQTDDDDDDDDDDEILEDDGYDDVTEDPDADTDDDLEHSSNGTCSESGNNGDDDLCDGFEANQKLSSSPPQISLLHQENVENSGKFQTQSNSCSAMQGSYSGEQLEEVPVEASSIHKLAGQRSSPHIKKSTTIASGPMNKRPTVWGRTPSKENAVLQASLERRKRDLHEHRQALEQDVARLQEQLQKERDLRTALEAGLNMSQGPLPISATIDGKVKAELEEVALTEADVINLKQRVDDLSAQLNQQCEVNCGPMHDSCSEPQRTQNHQAKLKDKQKDVETTSTSHLHEKSTRNKVQQDACMDGADRENKKHESKNPLQNQQLDPVRSSCSSKFVGAQATSSAADPAVGRSNSHSNSKKSGTRNEGSNSTTSALSKLTTRLNFLKERRTQIANEIQNMDKGRSSSSCSSSNQAAQNPERGRGSEGRQPVQNMDKSQASEVQSLQNTEKGKGPDCSQSLQNQDKPRKSDAQPQQKPG* 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0551 929 Coils Coil 676 696 - -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 570 600 - -
Vvi18g0551 929 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 77 604 - -
Vvi18g0551 929 SUPERFAMILY GTPase activation domain, GAP 240 434 IPR008936 -
Vvi18g0551 929 Pfam PH domain 81 185 IPR001849 -
Vvi18g0551 929 SMART PH_update 80 188 IPR001849 -
Vvi18g0551 929 ProSiteProfiles Rho GTPase-activating proteins domain profile. 233 432 IPR000198 GO:0007165
Vvi18g0551 929 MobiDBLite consensus disorder prediction 771 827 - -
Vvi18g0551 929 Pfam Leucine-zipper of ternary complex factor MIP1 621 700 IPR025757 -
Vvi18g0551 929 Pfam RhoGAP domain 242 385 IPR000198 GO:0007165
Vvi18g0551 929 MobiDBLite consensus disorder prediction 849 929 - -
Vvi18g0551 929 ProSiteProfiles PH domain profile. 79 186 IPR001849 -
Vvi18g0551 929 Coils Coil 827 847 - -
Vvi18g0551 929 SUPERFAMILY PH domain-like 79 185 - -
Vvi18g0551 929 CDD PH 82 181 - -
Vvi18g0551 929 Gene3D Rho GTPase activation protein 210 434 IPR008936 -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 570 591 - -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 442 522 - -
Vvi18g0551 929 SMART RhoGAP_3 239 429 IPR000198 GO:0007165
Vvi18g0551 929 Coils Coil 610 651 - -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 720 770 - -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 881 929 - -
Vvi18g0551 929 CDD RhoGAP 242 380 - -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 849 871 - -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 709 827 - -
Vvi18g0551 929 MobiDBLite consensus disorder prediction 446 487 - -
Vvi18g0551 929 Gene3D - 70 187 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0551 Vvi-Chr18 5555001 5604204 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0551 - - vvi:100259137 1598.18