Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0548 ATGGCTTCCGTCTCCGGCATCTGCTCTTCCTCATATCCGTTCAAATCCAAGCACTTCACCGCCAGATCATCGCCCTCCTCTACAATCATGCCTTCTTTTAGAATAGACTCTCTCACATTCCCCACTCGTCCTAAACTGGACGATCGGACTCTGGTTCTCACTCCGTCCGTGGCTCGGGAGGTATCGGCGGACTTGTCCAAAAGCGACCCGTCTCCCAAGAAGAAGGGACTAGAGAAGGACCCGGGAGCTCTGTGGCGCAGATACGTCGACTGGTTGTACCAGCACAAGGAGTTAGGGCTTTTTCTCGATGTGAGTCGGATCGGATTTTCGGAGGAGTTCGTGGAGGAGATGGAGCCCAGGTTCCAGGCGGCTTTTCGCGCGATGCAGGAGCTGGAGAAGGGAGCCATTGCGAATCCCGACGAAGGACGGATGGTTGGTCATTACTGGCTGAGGAGCTCTAAGCTCGCACCCAACCCGTTTCTGAAGTTGCAGATTGAGAATACTCTTGAGGCTGTTTGCAAGTTCGCCGAGGACGTCGTCAGCGGTAAGATTAAACCTCCATCTTCTCCAGAGGGTCGCTTTACACATGTCCTTTCTGTTGGAATTGGAGGTTCGGCTCTTGGACCTCAGTTTGTTGCAGAGGCATTGGCTCCTGATAATCCTCCTCTCAAGATAAGATTCATTGATAATACAGATCCAGCTGGAATTGATCACCAGATTGCCCAGCTTGGCCCCGAGCTGGCCTCTACAATAGTAATTGTCATTTCAAAGAGTGGAGGCACTCCTGAAACTAGGAATGGTTTGTTGGAAGTACAGAAGGCCTTTCGTGAAGCTGGTCTGGATTTTGCAAAACAGGGTGTTGCCATTACACAAGAAAATTCATTATTAGACAACACTGCTAGAATTGAGGGTTGGTTAGCTAGATTTCCTATGTTTGACTGGGTGGGTGGAAGGACATCTGAAATGTCTGCAGTTGGCCTACTTCCTGCTGCACTTCAGGGGATTGATATCAGAGAAATGCTTGCTGGTGCTTCATTGATGGATGAGGCTAATAGAACCACTGTGGTTAGGAATAACCCTGCAGCATTGCTAGCTTTATGTTGGTATTGGGCTTCTGAGGGAGTAGGATCCAAGGATATGGTTATTCTTCCTTACAAGGACAGCTTATTATTATTCAGTAGGTATTTGCAGCAACTGGTCATGGAATCAATTGGAAAGGAGTTTGACCTGGATGGAAATCGGGTGAATCAAGGACTTACGGTCTACGGGAATAAAGGCAGCACAGATCAACATGCATACATTCAACAATTGAGAGAGGGTGTGCACAACTTCTTTGTGACATTCATTGAAGTTCTGCGTGATAGACCCCCTGGTCATGATTGGGAGCTTGAACCAGGTGTCACATGTGGTGACTACCTCTTCGGAATGCTTCAGGGAACAAGGTCAGCTCTATATGCCAAGGACCGGGAATCAGTTACAGTCACTGTGCAGGAAGTGACGGCTAGATCTGTGGGGGCTATGATAGCATTGTATGAGCGAGCAGTTGGAATATATGCCTCACTAGTCAACATCAATGCTTACCATCAACCCGGTGTGGAAGCTGGGAAAAAGGCAGCAGGAGAAGTATTAGCTCTTCAGAAGCGGGTTCTGGCAGTTCTGAATGAGGCCAGCTGTAAGGAGCCCGTTGAACCATTGACACTTGATGAAGTAGCTGAACGCTGCCATGCGCCTGAAGATATCGAAATGATTTACAAGATTATTGCTCATATGGCCGCCAATGATAGAGCTCTTATTGCTGAAGGCAGTTGCGGTTCACCCCGGAGCATCAAAGTTTTCCTTGGGGAGTGTTATGTCGATGACCTGTATGCTTAA 1872 0.484 MASVSGICSSSYPFKSKHFTARSSPSSTIMPSFRIDSLTFPTRPKLDDRTLVLTPSVAREVSADLSKSDPSPKKKGLEKDPGALWRRYVDWLYQHKELGLFLDVSRIGFSEEFVEEMEPRFQAAFRAMQELEKGAIANPDEGRMVGHYWLRSSKLAPNPFLKLQIENTLEAVCKFAEDVVSGKIKPPSSPEGRFTHVLSVGIGGSALGPQFVAEALAPDNPPLKIRFIDNTDPAGIDHQIAQLGPELASTIVIVISKSGGTPETRNGLLEVQKAFREAGLDFAKQGVAITQENSLLDNTARIEGWLARFPMFDWVGGRTSEMSAVGLLPAALQGIDIREMLAGASLMDEANRTTVVRNNPAALLALCWYWASEGVGSKDMVILPYKDSLLLFSRYLQQLVMESIGKEFDLDGNRVNQGLTVYGNKGSTDQHAYIQQLREGVHNFFVTFIEVLRDRPPGHDWELEPGVTCGDYLFGMLQGTRSALYAKDRESVTVTVQEVTARSVGAMIALYERAVGIYASLVNINAYHQPGVEAGKKAAGEVLALQKRVLAVLNEASCKEPVEPLTLDEVAERCHAPEDIEMIYKIIAHMAANDRALIAEGSCGSPRSIKVFLGECYVDDLYA* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0548 623 PRINTS Glucose-6-phosphate isomerase signature 505 519 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 PRINTS Glucose-6-phosphate isomerase signature 385 406 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 PRINTS Glucose-6-phosphate isomerase signature 197 216 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 PRINTS Glucose-6-phosphate isomerase signature 519 532 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 PRINTS Glucose-6-phosphate isomerase signature 487 505 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 PRINTS Glucose-6-phosphate isomerase signature 309 327 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 Gene3D - 152 332 - -
Vvi18g0548 623 FunFam Glucose-6-phosphate isomerase 334 526 - -
Vvi18g0548 623 ProSiteProfiles Glucose-6-phosphate isomerase family profile. 54 552 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 Gene3D - 333 528 - -
Vvi18g0548 623 PANTHER GLUCOSE-6-PHOSPHATE ISOMERASE 3 622 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 Pfam Phosphoglucose isomerase 485 544 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 Pfam Phosphoglucose isomerase 128 453 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 SUPERFAMILY SIS domain 80 546 IPR046348 GO:0097367|GO:1901135
Vvi18g0548 623 CDD SIS_PGI_2 378 542 IPR035482 -
Vvi18g0548 623 ProSitePatterns Phosphoglucose isomerase signature 2. 519 536 IPR018189 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 CDD SIS_PGI_1 166 332 IPR035476 -
Vvi18g0548 623 Hamap Glucose-6-phosphate isomerase [pgi]. 35 546 IPR001672 GO:0004347|GO:0006094|GO:0006096
Vvi18g0548 623 FunFam Glucose-6-phosphate isomerase 149 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0548 Vvi-Chr18 5505900 5516304 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0548 K01810 - vvi:100262681 1232.24