Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g0545 | ATGAATATATTGCGAGTGAAGTTACTCATTTCCGAGTCGTTTTATCAAACATCTGGTGGACAAATCCAGATGACTAAGCCCTTTAAAAACCTCTGCTGTTTGATGAATCCGTTCCATGAATACCGTTGTTTCTCTTGTTCTCCTTCAGCACCTTCCTCTTCACTTCCCTGGATTTCTCCTCTTCAGTACCTCAATGCCACCTCTCCCAAACCTGACCCTCCAGCCACCGAAGCCACAACCACCATGGTAGAACCTCGGAAGAAACCCAAATTCATCTCTCACGAGTCGGCTATCAACTTGATCAAACGCGAGACCGATCCGCAACGCGCACTTGAGATATTTAACAGGGTAGCGGAGCAAAGGGGGTTCAGCCACAACAATGCTACATATGCTACCATCCTCCATAAGCTTGCCAAGTCCAAGAAATTTCAGGCTATTGATGCGGTGCTTCACCAAATGACCTATGAAACTTGCAAATTTCATGAGGGTATATTTCTTAACCTCATGAAACATTTCTCCAAGCTCTCTCTTCATGAGAGGGTGGTTGAGATGTTTGATGCCATCCGCCCAATTGTCCGTGAAAAACCTTCTCTCAAAGCCATCAGCACTTGTCTCAATCTCCTGGTTGAGTCAAATCAGGTTGATTTGACCCGCAAGTTTCTCTTGAATTCCAAGAAGAGTCTCAACTTGGAGCCCAATACCTGCATTTTCAACATTTTAGTCAAGCATCACTGCAAGAATGGGGATATTGATTCTGCTTTTGAAGTCGTCGAGGAGATGAAAAAGTCTCATGTTTCTTACCCAAACTTGATCACCTACTCTACGCTGATTAATGGTCTCTGTGGAAGTGGAAGACTAAAAGAAGCCATTGAATTGTTTGAGGAAATGGTCTCAAAGGATCAGATATTGCCCGATGCCCTGACTTACAACGCTTTGATTAATGGGTTTTGCCATGGAGAGAAGGTTGATCGAGCCCTGAAGATAATGGAGTTCATGAAGAAGAATGGATGCAACCCAAATGTATTTAATTACTCTGCCTTGATGAATGGCTTCTGTAAGGAGGGAAGACTGGAGGAGGCAAAGGAGGTTTTTGATGAGATGAAAAGCTTAGGACTGAAGCCTGATACAGTCGGCTATACCACTTTAATTAATTTTTTCTGTAGGGCTGGTAGGGTCGATGAAGCTATGGAGTTGCTCAAAGATATGAGAGAAAACAAGTGCAGAGCTGATACTGTAACTTTCAATGTGATACTCGGAGGATTGTGCAGAGAAGGAAGGTTCGAAGAGGCTCGTGGGATGCTTGAGAGGCTACCCTATGAGGGTGTTTACTTGAACAAAGCAAGTTACAGGATCGTGTTGAATTCCTTGTGCAGGGAAGGTGAATTGCAGAAGGCGACACAGCTTGTGGGCTTGATGCTGGGTAGGGGGGTTTTGCCCCATTTTGCTACCTCGAATGAGCTATTGGTTCATCTATGTGAGGCTGGAAAGGTGGGCGATGCAGTTATGGCTTTGCTTGGATTATTAGAACTGGGGTTCAAACCAGAGCCCAATTCATGGGCTCTTTTGGTTGAGTTGATTTGCAGGGAAAGAAAGCTATTGCCTGCATTTGAACTGCTCGATGACTTAGTTATACAAGAACCGTAA | 1644 | 0.4434 | MNILRVKLLISESFYQTSGGQIQMTKPFKNLCCLMNPFHEYRCFSCSPSAPSSSLPWISPLQYLNATSPKPDPPATEATTTMVEPRKKPKFISHESAINLIKRETDPQRALEIFNRVAEQRGFSHNNATYATILHKLAKSKKFQAIDAVLHQMTYETCKFHEGIFLNLMKHFSKLSLHERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERKLLPAFELLDDLVIQEP* | 548 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0545 | 547 | Pfam | PPR repeat family | 374 | 423 | IPR002885 | - | |
| Vvi18g0545 | 547 | Pfam | PPR repeat family | 304 | 353 | IPR002885 | - | |
| Vvi18g0545 | 547 | Pfam | PPR repeat family | 232 | 281 | IPR002885 | - | |
| Vvi18g0545 | 547 | NCBIfam | pentatricopeptide repeat | 236 | 268 | IPR002885 | - | |
| Vvi18g0545 | 547 | NCBIfam | pentatricopeptide repeat | 412 | 437 | IPR002885 | - | |
| Vvi18g0545 | 547 | NCBIfam | pentatricopeptide repeat | 379 | 410 | IPR002885 | - | |
| Vvi18g0545 | 547 | NCBIfam | pentatricopeptide repeat | 448 | 479 | IPR002885 | - | |
| Vvi18g0545 | 547 | NCBIfam | pentatricopeptide repeat | 344 | 376 | IPR002885 | - | |
| Vvi18g0545 | 547 | NCBIfam | pentatricopeptide repeat | 271 | 305 | IPR002885 | - | |
| Vvi18g0545 | 547 | NCBIfam | pentatricopeptide repeat | 308 | 341 | IPR002885 | - | |
| Vvi18g0545 | 547 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 445 | 479 | IPR002885 | - | |
| Vvi18g0545 | 547 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 305 | 339 | IPR002885 | - | |
| Vvi18g0545 | 547 | FunFam | Pentatricopeptide repeat-containing protein At5g39710 | 323 | 429 | - | - | |
| Vvi18g0545 | 547 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 410 | 444 | IPR002885 | - | |
| Vvi18g0545 | 547 | Pfam | PPR repeat | 448 | 477 | IPR002885 | - | |
| Vvi18g0545 | 547 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 340 | 374 | IPR002885 | - | |
| Vvi18g0545 | 547 | Gene3D | Tetratricopeptide repeat domain | 87 | 169 | IPR011990 | GO:0005515 | |
| Vvi18g0545 | 547 | Gene3D | Tetratricopeptide repeat domain | 194 | 320 | IPR011990 | GO:0005515 | |
| Vvi18g0545 | 547 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 269 | 303 | IPR002885 | - | |
| Vvi18g0545 | 547 | Gene3D | Tetratricopeptide repeat domain | 321 | 438 | IPR011990 | GO:0005515 | |
| Vvi18g0545 | 547 | Gene3D | Tetratricopeptide repeat domain | 439 | 546 | IPR011990 | GO:0005515 | |
| Vvi18g0545 | 547 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 233 | 267 | IPR002885 | - | |
| Vvi18g0545 | 547 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 375 | 409 | IPR002885 | - | |
| Vvi18g0545 | 547 | SUPERFAMILY | HCP-like | 244 | 436 | - | - | |
| Vvi18g0545 | 547 | PANTHER | RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED | 268 | 541 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g0545 | 310 | 545 | Glycosyltransferase | AT1G05670 | 23.673 | 2.18e-07 | 52.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g0545 | - | - | vvi:100243762 | 1006.51 |