Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0538 ATGACCCAACATTCCGAGTCGCCTCCAGTGTTCCCTACTAAGTTTGTCTGGAATTCTCAAGTCCCTTTCAAAGTCAAGTCCTTTGTCTGGTTGGTGGCGCACAAGAAGCTTAATACTAATGACTTGCTACAATTGAGAAGACCCCACAAAGCACTTAGTCCCAACATATGTAAGTTGTGCATGAAGCATGGAGAAACAGTAGATCACCTTTTCCTCCATTGCTCGTTGACCAAGGGGTTGTGGCACAGATTATTTCAGTTAGCAAAGATGGATTGGGTTTCCCCAAGGAGCATCTCTGACATGTTCTTTACTAATTTTAATGGTTTCGGTTCTTCTAAGAGAGGGGTTGTGTTATGGCAAGACGCGTGCATCGCGTTAATGTGGGTGGTGTGGCGGGAAAGAAATGCAAGGATTTTTGAGGATAAAGCAAGGAATTCAGGGTGTCTTTGGGATTCTATTCGTTTTTTGGCTTCTCTATGGGCTTTTTGTTCTAAGGTTTTTAAAGGGATTCCTCTTAACATGTTACAACTTGATTGGTTAGCGATTAATATTTGGAACTATCCAAGCCGCAAGCTTTTGCATTGCATAGAGACTGGGCATTCTGCTAATATATTCTGCGCAAAATTTATCCCTGAAACTTCTGATGAGCTTGTCGCCTCTGGAGCCGGAGATGCAGAAGTTCGGCTGTTTCATTTGTCTCGCTTAAGTGGGAGAGGACCAGATGAGAATGCTATTACCCCATCTGCACTGTTTCAGTGTCACACTAGGAGAGTAAAAAAATTAGCTGTGGAAGTTGGAAACCCTAATGTGGTATGGAGTGCAAGTGAAGATGGAACCTTGAGGCAGCATGACTTTCGGGAGGGTGCTTCCTGTCCCCCAGCTGGGTCTTCTCACCAAGAGTGTCGGAATGTTCTGCTTGACTTACGGTGTGGAGCAAAGAAATCGCTAGCTGATCCTCCCAAACAATGCCTTAGTTTAAAATCATGTGATATCAGTTCCACTAGGCCTCATTTGCTCCTTGTTGGTGGCAGTGATGCATTTGCTCGTTTATATGATAGAAGGATGCTGCCGCCACTGACATCCTGCGGGAAAACGATGACACCACCTCCTTGTGTTAACTATTTCTGCCCAATGCATCTTTCTGATCATGGCCGGTCAAGCTTGCACCTTACCCATGTTACATTTAGTCCAAATGGAGAAGAGGTTCTCATTAGTTATAGTGCAGAGCATGTTTACTTAATGGATGTAAATCATGCCTGTGGAAGCACCGTGTGTTACGCTCCAGGAGATGCTTTAAAGCTAATGAACCCTAGTCCTATACTGGATGGGATAGGATTTGGATCACCAGTGTCTGATGCATTCACATATGATTTTTCCATGAAAAGCAATATTGCTGCTAAGCTTGACAAGTGCAGGAAACTGGTTCAATTTGCAGAAAGATGCTTAAAGGAGGGGACAGATTATTTCTATGGAATTGAGGCTTGTAATGAAGTTTTGGATGGACATCCTCATGAGATTGGGCCTACACTAAAGCATGATTGCTTGTGTACACGTGCTGCGTTACTCCTCAAGCGGAAGTGGAAAAATGATGCTCATATGGCTATAAGAGATTGCAATAGAGCTCGGAGAATTGACACTTCTTCTTTTAAGGCACTCTTCTACATGTCTGAAGCTTTATTGCAGCTGAACAAACATAAAGAAGCTCTGGAATTTGCTGTTGCATCTCAATGTTTGGCCCCTTATGATTCTGAAGTGGCAGAAAGAGTGGAGGATATAAAAAAGCATCTTGCTGCAGCCGAAGCTGAGAAAAGTAACAAGTCAAATGATGGAGTACCTAGGTCTGAAACTAGATCTGGAAGATTTCTATCATTGAGTGAAATACTCTACAGATCAGAGGCAAATAGTGATGCTTCACAAGACGGGCCAAGATCTGAAAGAGAAGATTCTGATTATGATGAGGAATTAGAGTTGGACTTTGAAACATCGGTATCAGGTGATGAAGGACGAGATGTTGAATCTAACATTCTTCATGGAAGTTTAAACTTGAGAATTCATCGAAGATGTGATTCAGCTAGAGAAACAAGTGGTACAAATGGTGCATGTGGATCTCCTACATCATCAAGAAATGATAAAACAACTTACCAGCCTGAGACAGCGATTGACATGAAACAGAGATATGTTGGTCACTGCAATATAGGAACTGATATAAAACAGGCTAGTTTTCTTGGCTGTAGAGGTGAATATGTTGCCAGTGGAAGTGATGATGGAAGATGGTTTATCTGGGACAAGAGAACTGGTAGACTAATAAAAATGCTTATGGGAGATGAACATGTCGTGAACTGTGTGCAGTGTCATCCATTTGATTGTACTGTAGCCACCAGTGGGATTGATAACACAATAAAGATATGGACTCCAAGTGCTCCTATCCCATCCATTGTAGCTGGGGGAGCTGCAGGACCAGAGACAGCAGATGTGTTGGAAGCTATGGAGAACAATCAACGGAAATTATGCCGAAACCGTGATGCGATCCTGCCCTTTGAGCTTCTGGAGCGTTTCCGAATGCATGATTTCGGTGAAGGAACCTTGCATCCATTTGAGTGCTCTCAGAGCTAA 2613 0.4298 MTQHSESPPVFPTKFVWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFLHCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWRERNARIFEDKARNSGCLWDSIRFLASLWAFCSKVFKGIPLNMLQLDWLAINIWNYPSRKLLHCIETGHSANIFCAKFIPETSDELVASGAGDAEVRLFHLSRLSGRGPDENAITPSALFQCHTRRVKKLAVEVGNPNVVWSASEDGTLRQHDFREGASCPPAGSSHQECRNVLLDLRCGAKKSLADPPKQCLSLKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLTSCGKTMTPPPCVNYFCPMHLSDHGRSSLHLTHVTFSPNGEEVLISYSAEHVYLMDVNHACGSTVCYAPGDALKLMNPSPILDGIGFGSPVSDAFTYDFSMKSNIAAKLDKCRKLVQFAERCLKEGTDYFYGIEACNEVLDGHPHEIGPTLKHDCLCTRAALLLKRKWKNDAHMAIRDCNRARRIDTSSFKALFYMSEALLQLNKHKEALEFAVASQCLAPYDSEVAERVEDIKKHLAAAEAEKSNKSNDGVPRSETRSGRFLSLSEILYRSEANSDASQDGPRSEREDSDYDEELELDFETSVSGDEGRDVESNILHGSLNLRIHRRCDSARETSGTNGACGSPTSSRNDKTTYQPETAIDMKQRYVGHCNIGTDIKQASFLGCRGEYVASGSDDGRWFIWDKRTGRLIKMLMGDEHVVNCVQCHPFDCTVATSGIDNTIKIWTPSAPIPSIVAGGAAGPETADVLEAMENNQRKLCRNRDAILPFELLERFRMHDFGEGTLHPFECSQS* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0538 870 Pfam zinc-binding in reverse transcriptase 5 81 IPR026960 -
Vvi18g0538 870 FunFam Transducin family protein / WD-40 repeat family protein 673 847 - -
Vvi18g0538 870 SUPERFAMILY TPR-like 491 586 IPR011990 GO:0005515
Vvi18g0538 870 Gene3D Tetratricopeptide repeat domain 462 616 IPR011990 GO:0005515
Vvi18g0538 870 Gene3D - 178 428 IPR015943 GO:0005515
Vvi18g0538 870 ProSiteProfiles Trp-Asp (WD) repeats profile. 772 803 IPR001680 GO:0005515
Vvi18g0538 870 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 178 837 IPR045151 -
Vvi18g0538 870 Coils Coil 589 609 - -
Vvi18g0538 870 MobiDBLite consensus disorder prediction 632 654 - -
Vvi18g0538 870 SMART WD40_4 244 284 IPR001680 GO:0005515
Vvi18g0538 870 SMART WD40_4 765 804 IPR001680 GO:0005515
Vvi18g0538 870 SMART WD40_4 719 762 IPR001680 GO:0005515
Vvi18g0538 870 SMART WD40_4 319 352 IPR001680 GO:0005515
Vvi18g0538 870 SMART WD40_4 189 231 IPR001680 GO:0005515
Vvi18g0538 870 SMART WD40_4 373 415 IPR001680 GO:0005515
Vvi18g0538 870 Pfam WD domain, G-beta repeat 777 803 IPR001680 GO:0005515
Vvi18g0538 870 MobiDBLite consensus disorder prediction 693 713 - -
Vvi18g0538 870 SUPERFAMILY WD40 repeat-like 182 803 IPR036322 GO:0005515
Vvi18g0538 870 Gene3D - 681 808 IPR015943 GO:0005515
Vvi18g0538 870 MobiDBLite consensus disorder prediction 692 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0538 Vvi-Chr18 5378723 5429557 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0538 K11807 - vvi:100255806 1405.19