Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0536 ATGGATGCAGGATCTTTTTATTCTCCTACTTTTGAACCTTTACTTGATATTTCCTTTTCCATTATGACTCCTTCATATATATTATTTATTTATTTTATACTCCCTTCCATGATTTCATTCTTAGTTGGAACTTGTGATTCACTTAGACTGGAAGAAGAATTTTCTCTGTTCTTGAATCCTGTTATTGAAAGAACTCTCAGTCATGAAGCTAGGGAGGCATTCCTCTCAGCCTTAGTTTTAGAAGGACGTGCTGAATGGATGGATAAAGGACATAAAAAATGTCTTATTCTCTGGCATCAGATTCAAGATTGGGCTGACATCATTTTGCACTTTGTGAGAGATTATGGGTCGGAGGACAGTGTTATGACAGGAAATGCGGTCAGGAACTGA 390 0.3692 MDAGSFYSPTFEPLLDISFSIMTPSYILFIYFILPSMISFLVGTCDSLRLEEEFSLFLNPVIERTLSHEAREAFLSALVLEGRAEWMDKGHKKCLILWHQIQDWADIILHFVRDYGSEDSVMTGNAVRN* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0536 129 FunFam Uncharacterized protein 31 97 - -
Vvi18g0536 129 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS25 49 128 IPR008570 GO:0000814|GO:0071985
Vvi18g0536 129 Gene3D - 31 98 IPR014041 -
Vvi18g0536 129 SUPERFAMILY "Winged helix" DNA-binding domain 51 104 IPR036390 -
Vvi18g0536 129 Pfam ESCRT-II complex subunit 51 123 IPR008570 GO:0000814|GO:0071985
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0536 Vvi-Chr18 5356024 5360143 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0536 K12189 - vvi:100264410 137.502