Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0533 ATGAGCCAGCACCAGGGCCTTGAATCTCATGTTGCCAAACCAGAGTCCGATTACCCACCCTCAGCAGACTACGCTCCCTACCCAAAGCTCGATCCAAACGACGTCGCCCCGCCCAAGGAGGACTGGACAACAGTTACCATAAGTTCGCAAACGCCTCACCCCGTGTCGCAAAATTCGGGTTCTCCGATCTCTGAATCTGCGTCAGAAGGTCCGGCTCCGATTGCCCGCAACTCTGCCACCACTATGCCTGTTGAGTCCAATCCATACATCTCCTCATCGCCGGCGCCAGCGTCATCTATGAAGAATAAGATGGATTCAGTGAAGGATGTGCTTGGGAAATGGGGGAAAAAGGCAGCAGAGGCTACAAAGAAGGCCGAGGATCTTGCTGGGAATATGTGGCAACACTTGAAAATGGGCCCTAGTTTTGCTGATGCTGCTGTGGGAAGAATTGCTCAGGGAACAAAAGTTCTTGCAGAAGGTGGTTATGAGAAGATCTTTCAACAAACTTTTGAGACTGTGCCTGAGGAGCAACTTCAGAAGTCATATGCATGCTACCTATCCACATCTGCTGGTCCGGTTATGGGAATTTTGTATTTGTCAACAGAAAAACTTGCATTTTGTAGTGACAGTCCTCTGTCATACAAAGTGGGTGAGCAGACTGAATGGAGCTATTACAAGGTAGTTATCCCATTACACCAGCTGAAGGCTGTCAATACTTCAACTAGCAAAGTCAACCCAGCTGAAAAATATGTCCAGATCATCTCTGTTGACAACCACGAGTTTTGGTTCATGGGCTTTGTACACTATGATAGTGCTGTGAAAAATCTTCAAGGAGCATTGCAGCACCATTTTTGA 855 0.4772 MSQHQGLESHVAKPESDYPPSADYAPYPKLDPNDVAPPKEDWTTVTISSQTPHPVSQNSGSPISESASEGPAPIARNSATTMPVESNPYISSSPAPASSMKNKMDSVKDVLGKWGKKAAEATKKAEDLAGNMWQHLKMGPSFADAAVGRIAQGTKVLAEGGYEKIFQQTFETVPEEQLQKSYACYLSTSAGPVMGILYLSTEKLAFCSDSPLSYKVGEQTEWSYYKVVIPLHQLKAVNTSTSKVNPAEKYVQIISVDNHEFWFMGFVHYDSAVKNLQGALQHHF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0533 284 Gene3D - 162 282 IPR011993 -
Vvi18g0533 284 MobiDBLite consensus disorder prediction 1 101 - -
Vvi18g0533 284 Pfam GRAM domain 165 283 IPR004182 -
Vvi18g0533 284 MobiDBLite consensus disorder prediction 42 100 - -
Vvi18g0533 284 CDD PH-GRAM_GEM 175 282 - -
Vvi18g0533 284 PANTHER GEM-LIKE PROTEIN 2 83 283 IPR037848 -
Vvi18g0533 284 SMART gram2001c 164 241 IPR004182 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0533 Vvi-Chr18 5324007 5335621 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0533 - - vvi:100233038 551.206