Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0532 ATGCCGGAGCCGGAGGTCGATACGAGACGACGGGAGATCGCCGGAGTCCTCACCGGTGAATTCCAGTCGCCGTCCCCGGATCAAGTTCTCGAGAATGTTTTAGAGAACGTGCTCTTGTTCCTCACCTCTCGTCGCGACAGGAACGCGGTCTCACTGGTCTGCAAATCGTGGTACCGTGCGGAGGCGCTCACCCGATCCGACCTCTTCATCGGAAACTGCTACGCCGTGTCGCCTCGCCGCGCGATCGAGCGGTTCAGGCGGGTGAGGTCCGTGGTGCTCAAGGGGAAGCCGCGGTTCGCCGACTTTAACCTGATGCCTCCGAATTGGGGTGCTTACTTCACCCCTTGGGTAACGGCCATGGCTACCTCCTACCCGTGGCTCGAGAAGGTTTACCTGAAGCGGATGTTTGTTACCGATCGGGATTTGGAGCTTCTAGCTCAGTCCTTCCCTGCCTTTAAAGAGCTTGTGCTCGTTTGTTGTGACGGCTTCGGTACCAGTGGACTAGCCGGGATTGCAAGCAAGTGCAGGCAACTCAGAGTGCTTGATCTGATTGAGGATGAGGTTACTGATGATGAGGTGGATTGGATTTCTTGTTTCCCAGAGAGTGGTACTTGCCTTGAATCTTTGATTTTTGACTGCATTGAATGCCCTATAAATTTTGAGGCGTTGGAGCGTCTGGTGGCTAGATCTCCTTCGTTGAGGAAGCTTAGGTTGAATCGGTATGTTTCAATTGGGCAACTATATCGCCTAATGATTCGAGCTCCGCAGCTCACACATCTTGGTTCGGGTTCATTCAGCTCCTCAGACATTGTAGCTCAGGGTGATCAAGAACCAGATTACATCTCAGCTTTTGCAGCTTGCAAATCCTTAGTTTGTCTCTCAGGGTTTAGGGAAATAATACCGGATTACCTACCTGCAATCTATCCAGTTTGTGCTAATCTCACTTCTCTTAATTTCAGCTATGCCAATATTAACACAGAACAGCTCAAATCAGTCATCTGCCACTGCCATAAACTGCAGATTTTCTGGGTTCTTGATTCAGTCTGTGATGAAGGACTTCAGGCTGTTGCTGCAACATGCAAGGAGCTACGTGAGCTTAGGGTTTTCCCCATTGATGCTCGTGAGGATAGTGAGGGCCCTGTTTCTGAAGTGGGTCTGCAAGCAATTTCTGAGGGCTGTAGGAAGCTGCAATCTATTTTGTATTTCTGCCAGCGGATGACAAATGCAGCTGTGATAGCCATGTCCAAAAACTGCCCTGACCTGGTGGTGTTTCGTCTTTGTATAATGGGCCGGCACCGGCCTGACCATATTACAGGGGAACCCATGGATGAAGGATTTGGAGCCATTGTCATGAACTGTAAGAAGCTCACAAGGCTTGCCATATCTGGTTTACTAACTGACAAAGCTTTCAGTTATATTGGAAAATATGGGAAATTAGTTCGGACCCTGTCAGTTGCTTTTGCTGGAGACAGTGACATGGGGCTGAAATATGTGCTTGAGGGCTGCCCCAAATTGCAGAAACTTGAGATCAGAGATAGCCCCTTTGGAGATGCGGCTCTGCGATCTGGTTTACACCACTATTACAATATGAGATTCCTCTGGATGTCCTCCTGTAGATTATCTCGCCAAGGATGTGAGGAGATTGCACGAGCAATGCCTGGTCTAGTGGTGGAAGTGATTAGGAATGAGAACGAGGAGGATAAAGATGGTTTTGAGATATTATATATGTATCGCTCTCTTGAAAGGCCAAGGATTGATGCACCCGAATTTGTGACAATTCTGTAA 1785 0.4896 MPEPEVDTRRREIAGVLTGEFQSPSPDQVLENVLENVLLFLTSRRDRNAVSLVCKSWYRAEALTRSDLFIGNCYAVSPRRAIERFRRVRSVVLKGKPRFADFNLMPPNWGAYFTPWVTAMATSYPWLEKVYLKRMFVTDRDLELLAQSFPAFKELVLVCCDGFGTSGLAGIASKCRQLRVLDLIEDEVTDDEVDWISCFPESGTCLESLIFDCIECPINFEALERLVARSPSLRKLRLNRYVSIGQLYRLMIRAPQLTHLGSGSFSSSDIVAQGDQEPDYISAFAACKSLVCLSGFREIIPDYLPAIYPVCANLTSLNFSYANINTEQLKSVICHCHKLQIFWVLDSVCDEGLQAVAATCKELRELRVFPIDAREDSEGPVSEVGLQAISEGCRKLQSILYFCQRMTNAAVIAMSKNCPDLVVFRLCIMGRHRPDHITGEPMDEGFGAIVMNCKKLTRLAISGLLTDKAFSYIGKYGKLVRTLSVAFAGDSDMGLKYVLEGCPKLQKLEIRDSPFGDAALRSGLHHYYNMRFLWMSSCRLSRQGCEEIARAMPGLVVEVIRNENEEDKDGFEILYMYRSLERPRIDAPEFVTIL* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0532 594 Gene3D - 20 65 - -
Vvi18g0532 594 Pfam F-box 27 66 IPR041567 -
Vvi18g0532 594 SUPERFAMILY RNI-like 50 555 - -
Vvi18g0532 594 SMART LRR_CC_2 502 526 IPR006553 -
Vvi18g0532 594 SMART LRR_CC_2 124 148 IPR006553 -
Vvi18g0532 594 SMART LRR_CC_2 149 174 IPR006553 -
Vvi18g0532 594 SMART LRR_CC_2 393 417 IPR006553 -
Vvi18g0532 594 SMART LRR_CC_2 453 476 IPR006553 -
Vvi18g0532 594 FunFam Transport inhibitor response 1-like protein 20 65 - -
Vvi18g0532 594 CDD F-box_AtTIR1-like 27 65 - -
Vvi18g0532 594 FunFam Transport inhibitor response 1 66 594 - -
Vvi18g0532 594 Gene3D Ribonuclease Inhibitor 67 594 IPR032675 -
Vvi18g0532 594 Pfam Transport inhibitor response 1 protein domain 87 132 IPR041101 -
Vvi18g0532 594 SUPERFAMILY F-box domain 26 60 IPR036047 GO:0005515
Vvi18g0532 594 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 106 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0532 Vvi-Chr18 5311507 5314031 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0532 - - vvi:100245501 1191.02