Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0530 ATGAGATGCCTGACTCTGCCCCAATCACTCCCTGTTTCTCTTCTTTCAATCAATAAAACACACGTTTTCAGATCGGGCTTCTCCTATCCATTTTGGAGGTCCACAGTTGGTTCCTTTTGTTCGACGTCTGGTGTGTTCACGCGAATGGGGGATAGAGGTGTTTCAGCGCTACAGAGCTTCCACAATCAAGATTCTATATCGTATCTCTTGCAGCGGGAAGCCGCCGAGATTGATGAGACCCTCATGGGTCCTCTTGGTTTCAGTGTCGATCAGTTGATGGAACTGGCGGGGTTGAGTGTCGCTACATCAATTGCAGAGGTTTACAGACCCAGTGAATATAACCGTGTTCTGGCTATTTGCGGACCAGGGAACAATGGTGGTGATGGGCTGGTGGCTGCTCGTCATCTACATCATTTTGGATATAAACCATACATTTGTTATCCTAAGCGTACTCCCAAGCCTCTTTATACTGGTCTGGTTACTCAGTTGGAATCGTTGTCAGTACCTTTCTTGTCAGTGGAAGACCTACCATTGGACTTGTCAAATGACTTTGACATTCTGGTGGATGCGATGTTTGGATTCTCCTTCCATGGTGCTCCAAGACCACCTTTTGATGATCTGATACGGAGGATGATTTGTTTACACAACTATGGCCAAACACGGCAGAAACCACCTGTCATTGTCTCCATAGATATTCCATCAGGGTGGCATGTTGAAGAGGGAGATATTGATGGTGAAGGCATTAAACCTGATATGCTGGTTTCTTTAACTGCTCCAAAGTTGTGTGCCAAAAAATTTTCTGGTCCACACCACTTTCTGGGTGGTAGATTTGTTCCACCATTTATTGCGGATAAATTTAAGCTTCACCTTCCACCATATCCTGGAACTGCCATGTGTGTTCGAATTGGAAAGCCTCCACAAATTGACATATCAGCTCTCAGAGAGAACTATATTTCTCCAGAGTTTCTTGAGGAGTATGTGGAAGCTGACCCCATGGATCAGTTTCGCAAATGGTTTGATGATGCAGTGGTTGCTGGCTTGAAGGAACCAAATGCCATGGCCTTGTCAACTGCCGGCAAGGATGGAAAACCGTCATCACGGATTGTACTGCTAAAGGGGGTCGATAAGGATGGTTTTGTCTGGTACACCAATTATGGAAGTCGAAAGGCACACGAAATATCTGAAAATCCTCATGCATCACTTCTTTTCTACTGGGATGGTCTTAATCGACAGGTAAGAATTGAAGGACCTGTCCAGAAAGTTTCTGAGTTGGAGTCTGAGCAGTACTTCCATAGTCGTCCACGAGGAAGTCAGATTGGAGCTATTGTTAGCAAGCAGAGTACTATAGTTCCTGGAAGGCATGTTCTCCACCAAGAATACAAAGAATTAGAGAACAAATTCTCTGATGGAAGTATGATTCCAAAACCTAAATACTGGGGAGGATACAGGCTGAAACCTGAGCTTTTCGAATTTTGGCAAGGACAGCAATCTCGCTTGCATGACAGGTTGCAATATTCACCTGAAGAGATCAATGGAAAACGAGTATGGAGAATTGATCGGTTGGCACCCTGA 1572 0.4485 MRCLTLPQSLPVSLLSINKTHVFRSGFSYPFWRSTVGSFCSTSGVFTRMGDRGVSALQSFHNQDSISYLLQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEVYRPSEYNRVLAICGPGNNGGDGLVAARHLHHFGYKPYICYPKRTPKPLYTGLVTQLESLSVPFLSVEDLPLDLSNDFDILVDAMFGFSFHGAPRPPFDDLIRRMICLHNYGQTRQKPPVIVSIDIPSGWHVEEGDIDGEGIKPDMLVSLTAPKLCAKKFSGPHHFLGGRFVPPFIADKFKLHLPPYPGTAMCVRIGKPPQIDISALRENYISPEFLEEYVEADPMDQFRKWFDDAVVAGLKEPNAMALSTAGKDGKPSSRIVLLKGVDKDGFVWYTNYGSRKAHEISENPHASLLFYWDGLNRQVRIEGPVQKVSELESEQYFHSRPRGSQIGAIVSKQSTIVPGRHVLHQEYKELENKFSDGSMIPKPKYWGGYRLKPELFEFWQGQQSRLHDRLQYSPEEINGKRVWRIDRLAP* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0530 523 FunFam NAD(P)H-hydrate epimerase 324 523 - -
Vvi18g0530 523 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 316 523 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vvi18g0530 523 NCBIfam NAD(P)H-hydrate epimerase 71 267 IPR004443 -
Vvi18g0530 523 Pfam Pyridoxamine 5'-phosphate oxidase 339 423 IPR011576 -
Vvi18g0530 523 ProSiteProfiles YjeF N-terminal domain profile. 74 310 IPR004443 -
Vvi18g0530 523 NCBIfam pyridoxamine 5'-phosphate oxidase 330 523 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vvi18g0530 523 PANTHER PYRIDOXINE-5-PHOSPHATE OXIDASE 309 523 IPR000659 GO:0004733|GO:0008615|GO:0010181
Vvi18g0530 523 Gene3D - 317 514 IPR012349 -
Vvi18g0530 523 SUPERFAMILY FMN-binding split barrel 325 523 - -
Vvi18g0530 523 FunFam NAD(P)H-hydrate epimerase 66 307 - -
Vvi18g0530 523 Gene3D - 65 307 IPR036652 -
Vvi18g0530 523 Hamap NAD(P)H-hydrate epimerase [nnrE]. 70 305 IPR004443 -
Vvi18g0530 523 SUPERFAMILY YjeF N-terminal domain-like 71 297 IPR036652 -
Vvi18g0530 523 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 489 502 IPR019740 GO:0016638
Vvi18g0530 523 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 479 523 IPR019576 -
Vvi18g0530 523 Pfam YjeF-related protein N-terminus 90 262 IPR004443 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0530 K23998 - vvi:100267813 1082.01