Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0523 ATGGCATTTCGATGCCTCTTCTTCACTCTCAGACGTTACGCATACTCATCAAGGAGGTCTATTTCCTCAAAAACCACGCCAATGGATGAGGCAGCATGTACCTGTAAAAGGGATGACCTCACGAGCAGGATGTTGAAGCTCGTATTCCCTAGGCGAAGCGCCACCGCGGTGCTTCAGAACTGGATCGATCAAGGCCATAAGGTCACCGCTTCCGACCTTCGTAATGTTTCCAGACAACTTCTGAAATCCAAGCGCCACAAACACGCACTCGAGATATTGGCATGGATGGAAGCTCAAAACCGATTTCAGATGTCAGCAGCTGATCATGCCATCAGATTGGAATTAATCATAAAAATCCAAAGTTTAGCAGAGGCCGAAGAGTATTTTGAACATTTACCCAATTCCTCTTCACGGAAAGCGGCATGTCTACCTCTTCTTCATGCTTATGTAAAAGAAAGGGCTATTGAAAAAGCTGAGGCTCTCATGCTGAAGCTGAATGACCTGGGGCTGACTGTGAGCCCTCATCCATTTAATGAAATGATGAAGCTTTATATGGCTACATCTCAATTTGAGAGAGTGCCCACTGTGATTCTGCAAATGAAGCAAAACAAAATACCCTTAAATGTTCTATCCTACAACCTCTGGATGAGTGCTTGCAGTGAGGTATCTGGGCTTGCTTCAGCAGAGATGGTTTACAAAGATATGGTGGATGATAAGAACGTGGAAGTGGGGTGGAGTACCCTTTCTACTTTAGCCAATATCTATCTGAAATCTGGACTTATCAAGAAGGCCAATTTGGCCCTAAAAAACGCAGAAAAGAAGCTATCTGCTCATAATCGCCTTGGTTATTTCTTCCTTATTACAATGTATGCCTCTTTGAGCAATAAGGAGGAAGTTCTTCGGCTTTGGGAAGCTAGTAAAAAAGTGGGAGGTAGAATCACATCTACCAATTACATGTGCATATTGTTGTGTTTGGTAAAGCTTGGTGATATTGCAGAAGCTGAGAGAATTTTCAGGGAATGGGAATCCAAGTGTTGGAAGTATGACATTAGAGTCTCCAATGTCCTTCTGGGTGCATACATGAGGACTGGATCAATGGACAAAGCTGAGTCATTACATCTTCACACATTGGAGAGAGGTGGGTGTCCAAATTATAAGACATGGGAGATTCTTATGGAGGGATGGATGAAAAGCCAAAATATGGATAAAGCCATCAATGCCATGAAAAAAGGGTTTTCCATGTTGAAACATTGTGATTGGAGGCCAAACCATGGTCTTGTAACGGCCATTGCAAGGTACTTGGAGGAGCATGGGAATGTTAACGATCTGAATCAGTATGTTAAAGTTATTCACCAATTAGGTGTTGCAAAATTACCATTGTATAAATCTTTACTCAGAATGCATCTGCTCTTTCAAAGACCAGTCTTTGACATCCTTAAAATGATGGAGAAGGATGAAATTGAGATGGATGATGAGACTTCTGCCCTTGTTCAAGCCTTCAAAGTGTAA 1509 0.4235 MAFRCLFFTLRRYAYSSRRSISSKTTPMDEAACTCKRDDLTSRMLKLVFPRRSATAVLQNWIDQGHKVTASDLRNVSRQLLKSKRHKHALEILAWMEAQNRFQMSAADHAIRLELIIKIQSLAEAEEYFEHLPNSSSRKAACLPLLHAYVKERAIEKAEALMLKLNDLGLTVSPHPFNEMMKLYMATSQFERVPTVILQMKQNKIPLNVLSYNLWMSACSEVSGLASAEMVYKDMVDDKNVEVGWSTLSTLANIYLKSGLIKKANLALKNAEKKLSAHNRLGYFFLITMYASLSNKEEVLRLWEASKKVGGRITSTNYMCILLCLVKLGDIAEAERIFREWESKCWKYDIRVSNVLLGAYMRTGSMDKAESLHLHTLERGGCPNYKTWEILMEGWMKSQNMDKAINAMKKGFSMLKHCDWRPNHGLVTAIARYLEEHGNVNDLNQYVKVIHQLGVAKLPLYKSLLRMHLLFQRPVFDILKMMEKDEIEMDDETSALVQAFKV* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0523 502 Gene3D Tetratricopeptide repeat domain 42 181 IPR011990 GO:0005515
Vvi18g0523 502 Gene3D Tetratricopeptide repeat domain 182 275 IPR011990 GO:0005515
Vvi18g0523 502 Gene3D Tetratricopeptide repeat domain 276 456 IPR011990 GO:0005515
Vvi18g0523 502 FunFam Pentatricopeptide repeat-containing protein At5g27460 283 471 - -
Vvi18g0523 502 Coils Coil 261 281 - -
Vvi18g0523 502 FunFam Pentatricopeptide repeat-containing protein At5g27460 197 278 - -
Vvi18g0523 502 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 42 186 - -
Vvi18g0523 502 Pfam PPR repeat 354 374 IPR002885 -
Vvi18g0523 502 Pfam PPR repeat 318 344 IPR002885 -
Vvi18g0523 502 Pfam Pentatricopeptide repeat domain 164 219 IPR002885 -
Vvi18g0523 502 SUPERFAMILY HCP-like 258 410 - -
Vvi18g0523 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Vvi18g0523 502 PANTHER OS12G0527900 PROTEIN 26 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0523 Vvi-Chr18 5240767 5244202 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0523 50 454 EF-hand Containing Proteins AT1G02150 35.714 1.15e-93 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0523 - - vvi:100252393 982.245