Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0521 ATGGGCAGATTCGGATGGCTAGGGTTGTTTTGCACGGTTACAACGTTCTTCATGGGAAGCCTTCTGATTTTGCAACCATGGGAATACCATCAGCAACGCGGTATATTCATGCTACAGCTTGCTAAGAAGTTCCATCCAGATGCAAACAAGAACAATCCTTATGCAAAGAGGAAGTTTCAAGAGATAAGAGATGCCTATGAGATCTTTGAACATGAGACTGAAAATTTTGCAACTGATATTCAGGTGGAGCTGTCACTCTCTTTTTCTGAAGCTGCTAAAGGATGCACAAAGCATCTCTCTTTTGATGCATATATCCCCTGTGATTCCTGCTATGGGCGTGGCCATCCTGTTGATGCCAAGACAAAAGTTTGTCCAATTTGCAAAGGCATTGGGAGAGTTACTATTCCTCCATTCACATCGACATGTAGTAGTTGTAAAGGCTTGGGGCGAATTGTTAAGGAGCATTGTACAACATGCAGAGGATCAGGGGTAGTTGAAGGTGTTAAGGATGTTGAAGTTGTTATACCAGCAGGTGTTGATTCTGGAGATACTATCCATGTGCCAAAAGTTGGTAATGCTGGAGGACGAGGAGTTGAACCTGGGAACTTATACATAAAATTAAAGGCACAACTTTACCTATTTCACTCTGTTGCTAAAGATCGTACTTTTGTCAGAGATGGTGCAGATGTTTATGTGGAATCTAGTATCAGCTTTACACAAGCAATTCTTGGTGGTACAGTTGAGGTGCCAACTCTATCTGGGAAGATGCAATTAAAAATACCAAAGGGGGTTCAGCCTGGACAGCTTTTGGTACTAAGAGGAAAAGGATTGCCAAAGCATGGTCTTCTTGTAGACCATGGAGATCAGTATGTGCGTTTCCGCATTAACTTCCCCACGGCAATAAATGAACGCCAACGTGCTATCTTAGAGGAATTTGCAAAGGAAGAAATAGTTCATGACAGCAGCACATCTGGTGAAGGAAATTGTCAAGGAAAAATTTTGAAAATAGTTGCATGGGACTATTATAATCAAGAACTCAAATAG 1044 0.4167 MGRFGWLGLFCTVTTFFMGSLLILQPWEYHQQRGIFMLQLAKKFHPDANKNNPYAKRKFQEIRDAYEIFEHETENFATDIQVELSLSFSEAAKGCTKHLSFDAYIPCDSCYGRGHPVDAKTKVCPICKGIGRVTIPPFTSTCSSCKGLGRIVKEHCTTCRGSGVVEGVKDVEVVIPAGVDSGDTIHVPKVGNAGGRGVEPGNLYIKLKAQLYLFHSVAKDRTFVRDGADVYVESSISFTQAILGGTVEVPTLSGKMQLKIPKGVQPGQLLVLRGKGLPKHGLLVDHGDQYVRFRINFPTAINERQRAILEEFAKEEIVHDSSTSGEGNCQGKILKIVAWDYYNQELK* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0521 347 ProSiteProfiles Zinc finger CR-type profile. 94 168 IPR001305 GO:0031072|GO:0051082
Vvi18g0521 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 223 309 IPR008971 GO:0006457|GO:0051082
Vvi18g0521 347 Gene3D - 219 325 - -
Vvi18g0521 347 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 94 165 IPR036410 -
Vvi18g0521 347 Gene3D DnaJ domain 29 75 IPR036869 -
Vvi18g0521 347 Gene3D - 107 163 - -
Vvi18g0521 347 Pfam DnaJ domain 39 72 IPR001623 -
Vvi18g0521 347 PRINTS DnaJ domain signature 37 52 IPR001623 -
Vvi18g0521 347 PRINTS DnaJ domain signature 54 74 IPR001623 -
Vvi18g0521 347 Pfam DnaJ central domain 107 163 IPR001305 GO:0031072|GO:0051082
Vvi18g0521 347 Pfam DnaJ C terminal domain 80 298 IPR002939 -
Vvi18g0521 347 CDD DnaJ_zf 107 163 IPR001305 GO:0031072|GO:0051082
Vvi18g0521 347 SUPERFAMILY Chaperone J-domain 39 78 IPR036869 -
Vvi18g0521 347 Gene3D - 78 205 - -
Vvi18g0521 347 CDD DnaJ 39 68 IPR001623 -
Vvi18g0521 347 CDD DnaJ_C 79 299 - -
Vvi18g0521 347 SUPERFAMILY HSP40/DnaJ peptide-binding domain 79 208 IPR008971 GO:0006457|GO:0051082
Vvi18g0521 347 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 39 316 - -
Vvi18g0521 347 FunFam Chaperone protein dnaJ 1, mitochondrial 218 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0521 Vvi-Chr18 5184425 5218160 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0521 - - vvi:100259253 527.324