Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0514 ATGGGGAGCATCGGCGGTGACGAGGATCTTAATCGGCCGTTGCTACAGGAATCAAAGGGCGTGGTTGTAGATCCGGAGAAAGAAAAGCTTGCATCAAGGGTGTGGATTGAATCGAAAAAACTATGGCACATAGTGGGTCCCTCCATCTTCAGTCGGGTCGCTTCTTACTCCATGAACGTTGTCACTCAAGCCTTCGCCGGCCACCTGGGTGAACTGGAGCTCGCTTCAATCTCCATAGCCAATACTGTCATCGTTGGCTTCAATTTTGGCCTCTTGTTAGGCATGGCAAGCGCACTAGAGACGCTGTGCGGGCAAGCCTTTGGAGCAAAGAAGTATCACATGTTGGGGATATACATGCAAAGGTCGTGGATTGTTCTTTTCTTATGTTGTTTTCTGCTATTACCATTCTACGTGTTCGCCACCCCGCTTTTGAAGTTGCTGGGTCAACCGGACGATGTGGCGGAGCAGTCAGGATTGGTGGCTTTATGCTTGATTCCGTTGCACTTCAGCTTTGCGTTTCAGTTCCCGTTGCAGAGGTTCTTGCAAAGCCAGCTGAAGACAGGAGTCATCGCCTGGGTTTCTTTGGTGGCGTTTGTGATTCACGTGTTCATTAGCTGGCTCTTCGTCTACAAGCTGGAATTTGGTATAATCGGCACCGCAATTACTCTCAACTTCTCCTGGTGGATATTGGTTTTCGGAATGTTGGGGTATACCGTGTGCGGTGGGTGCCCACTTTCTTGGACCGGTTTCTCCATGCAGGCCTTTTCTGGGCTCTGGGAGTTCGTCAAACTCTCTACTGCTTCCGGAGTCATGCTATGCTTGGAGAATTGGTATTACAGGATACTAATTTTGATGACTGGGAACTGGAAGAATGCCGAGGTGGCCGTGGATGCCTTGTCGGTCTGCATGACAATCAATGGGTGGGAAATGATGATTCCTCTTGCCTTTTTTGCAGCAACCGGGGTAAGGGTTGCCAATGAGCTAGGAGCTGGGAATGGTAAGGGGGCAAATTTTGCAACCAAGGTGTCCGTGGCGACTTCTTCAGTGATTGGTTTTGTGTTCTTCCTACTTATCATTGTATTTCAGAATCAGTTGGCAATGATATTCACATCTAGCACTCCTGTGCTTGAACAAGTTGACAAGCTCTCCTTCCTCCTAGCGATCACCATTCTCCTCAACAGCGTTCAACCAGTTTTATCAGGGGTGGCTGTTGGATCGGGATGGCAGGCATGGGTCGCATATATAAATTTAGGATGCTATTACATCATTGGGCTCCCGCTTGGAATTGTGATGGGCTGGGTTTTGCACTTAGGTGTTGCGGGCGTGTGGGGTGGGATGATTGTTGGCGGGACTGCTCTTCAGACCTTGATATTATCCATCATGACAATGCGAACCAATTGGGAAAAGGAGGCCGAGAAAGCTAAGGCTGATGTACAAAAGTGGTCCGCTCCTAGTCCAGTTGATGAATCCTAG 1473 0.4908 MGSIGGDEDLNRPLLQESKGVVVDPEKEKLASRVWIESKKLWHIVGPSIFSRVASYSMNVVTQAFAGHLGELELASISIANTVIVGFNFGLLLGMASALETLCGQAFGAKKYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPLLKLLGQPDDVAEQSGLVALCLIPLHFSFAFQFPLQRFLQSQLKTGVIAWVSLVAFVIHVFISWLFVYKLEFGIIGTAITLNFSWWILVFGMLGYTVCGGCPLSWTGFSMQAFSGLWEFVKLSTASGVMLCLENWYYRILILMTGNWKNAEVAVDALSVCMTINGWEMMIPLAFFAATGVRVANELGAGNGKGANFATKVSVATSSVIGFVFFLLIIVFQNQLAMIFTSSTPVLEQVDKLSFLLAITILLNSVQPVLSGVAVGSGWQAWVAYINLGCYYIIGLPLGIVMGWVLHLGVAGVWGGMIVGGTALQTLILSIMTMRTNWEKEAEKAKADVQKWSAPSPVDES* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0514 490 PANTHER MULTIDRUG RESISTANCE PROTEIN 30 467 - -
Vvi18g0514 490 NCBIfam MATE family efflux transporter 47 443 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g0514 490 CDD MATE_eukaryotic 37 473 IPR045069 GO:0042910|GO:1990961
Vvi18g0514 490 Pfam MatE 269 429 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g0514 490 Pfam MatE 47 207 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0514 Vvi-Chr18 5062243 5066242 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0514 K03327 - vvi:100242048 966.837