Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0499 ATGATGTATTTTTTTAGGGGAAAGAAAGACAGAATGGATGACTTGATGGTGGAGCTGACACTGGATGCTGATGTGAATAGAACAGGAGACATATGGCACATATGTGTTGAGGATTTGCCTCGGAGCAATGTTCTTTATGGTTATTGCATAGATGGTCCTCGAGATTGGCATCAAGGGCATCGATTTGACAACAGCACAGTGCTCATAGATCCTTATGCAAAACTAGTTGAAGGTCGCCGATTTTTTGGGGATGCTAGCAATAAGTGGTCCAAATTTCTAGGAACTTATGATTTTGATAGCTTGCCTTTTGATTGGGGAGACAATTACAAGGTTCCAAGTATACCTGAGAAAGATCTTGTTATATATGAGATGAATGTTCGTGCATTTACAGCTGATAAATCTAGTGGATTGGATCCAAATGTCCGTGGCAGCTACCTTGGTGTGATTGAAAAGATTCCACACCTGCTTGATCTTGGAATCAATGCAGTGGAATTGCTGCCTGTTTTTGAGTTTGATGAGTTCGAATTTCAGAGGCGCCCAAACCCTAGAGATCACATGATTAACACGTGGGGATATTCAACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGACCTATTAAAGCTTCCAGGGAGTTCAAAGAAATGGTGAAAGCCTTGCATGGTGCTGGAATAGAGGTCATTTTAGATGTTGTTTATAACCATACTAATGAGGCTGATGATGAAAACCCTTACACCACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGGTGGACCTAAACAATGAAGGCCAGTTGCTGAACTTCTCTGGCTGCGGAAACACACTAAACTGCAACCATCCCATGGTGATGGAACTCATACTTGACAGCTTGAGACACTGGGTCATTGAGTATCATGTGGATGGATTTCGATTTGATCTGGCTAGCGTTCTTTGTCGAGGAACAGATGGTTCTCCACTTAATGCTCCCCCAATTATTAGGGAAATTGCTAAAGATGATATCCTGTCAAGGTGTAAAATTATTGCAGAACCTTGGGATTGTGGTGGCCTTTACCTTGTTGGAAGGTTTCCAAATTGGGATCGGTGGGCTGAATGGAATGGGAAGTACCGTGATGACCTTAGAAGATTTATAAAGGGGGACCCAGGTACTAAGGGGAATTTTGCCACTCGTGTTGCTGGATCTTCCGACCTATACAAAGTGAATAAGCGCAAACCATACCACAGTGTAAATTTTGTTATTGCACATGATGGGTTTACATTGTACGACCTTGTGTCATACAATTCTAAGCACAATAATGCTAATGGAGAGGGTGGAAAGGATGGAACTAATGATAATTTTAGCTGGAATTGTGGTTTTGAAGGAGAAACTGCTGATGCTAAAATTAAAGCTTTACGTTCCCGGCAAATGAAGAATTTCCACTTGGCATTAATGTGTTCCCAGGGAACACCAATGATGCTAATGGGTGATGAATATGGGCACACTCGCTATGGAAATAATAACAGTTATGGACACGATACTGCTATTAATCATTTTCTGTGGGGACAGTTGGATTCAAGGAAGAGGGATCGCTTTCGGTTTTTTAAAGAGGTGATAAAGTTTCGCCGCATGCATCATGTTTTTGGACGTGAAAATTTTCTTGAGAAGAAAGATGTGACATGGCATGAGGACAACTGGGACAATTATGAGAGCAAATTCCTTGCATTCACACTTCATGCAAATAATGGAGGAGACATATATTTGGCATTCAACACTCATGACTTCTTTGTCAAAGTTGCAATACCCTCACCACCAGCAAACAGGCGTTGGTTCCGAGTGGTAGACACTAATCTGGAGTCTCCCAAAGATTTTGTCTCTGAAGGTGTCCCAGGCATTGGAAGCGCTTACAATGTGGCTCCTTACTCTTCAATTCTTCTTGAAGCAAAGCTATGA 1950 0.4159 MMYFFRGKKDRMDDLMVELTLDADVNRTGDIWHICVEDLPRSNVLYGYCIDGPRDWHQGHRFDNSTVLIDPYAKLVEGRRFFGDASNKWSKFLGTYDFDSLPFDWGDNYKVPSIPEKDLVIYEMNVRAFTADKSSGLDPNVRGSYLGVIEKIPHLLDLGINAVELLPVFEFDEFEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGPIKASREFKEMVKALHGAGIEVILDVVYNHTNEADDENPYTTSFRGIDNKVYYMVDLNNEGQLLNFSGCGNTLNCNHPMVMELILDSLRHWVIEYHVDGFRFDLASVLCRGTDGSPLNAPPIIREIAKDDILSRCKIIAEPWDCGGLYLVGRFPNWDRWAEWNGKYRDDLRRFIKGDPGTKGNFATRVAGSSDLYKVNKRKPYHSVNFVIAHDGFTLYDLVSYNSKHNNANGEGGKDGTNDNFSWNCGFEGETADAKIKALRSRQMKNFHLALMCSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINHFLWGQLDSRKRDRFRFFKEVIKFRRMHHVFGRENFLEKKDVTWHEDNWDNYESKFLAFTLHANNGGDIYLAFNTHDFFVKVAIPSPPANRRWFRVVDTNLESPKDFVSEGVPGIGSAYNVAPYSSILLEAKL* 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0499 649 SMART aamy 123 541 IPR006047 GO:0005975
Vvi18g0499 649 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 23 73 IPR004193 GO:0004553|GO:0005975
Vvi18g0499 649 Gene3D - 556 649 IPR013780 -
Vvi18g0499 649 Pfam Alpha amylase, catalytic domain 144 501 IPR006047 GO:0005975
Vvi18g0499 649 SUPERFAMILY E set domains 17 107 IPR014756 -
Vvi18g0499 649 ProSiteProfiles PUA domain profile. 219 237 - -
Vvi18g0499 649 SUPERFAMILY (Trans)glycosidases 101 547 IPR017853 -
Vvi18g0499 649 FunFam Glycogen debranching enzyme 99 555 - -
Vvi18g0499 649 Gene3D Glycosidases 99 555 - -
Vvi18g0499 649 CDD E_set_GDE_Isoamylase_N 18 123 IPR044505 -
Vvi18g0499 649 SUPERFAMILY Glycosyl hydrolase domain 554 648 - -
Vvi18g0499 649 PANTHER GLYCOGEN DEBRANCHING ENZYME 12 648 - -
Vvi18g0499 649 CDD AmyAc_Glg_debranch 103 544 - -
Vvi18g0499 649 Gene3D Immunoglobulins 1 94 IPR013783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0499 Vvi-Chr18 4904016 4953892 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0499 7 648 Glycoside Hydrolase AT4G09020 78.849 0.0 1081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0499 K01214 - vvi:100255802 1355.12