Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0486 ATGGACTGCGCAATTGAGAGAAGTAAGATACAAGTGCTGTATGATGCCTGTGATGCTGTGTTCTCTCAGAAGGAGCTTCCAACTTTCCAACAGATTCAGTGGCTGAAGAATCTCCTAGACTTAATGGAAGCCATCGATGTTGGGATTGACGAATTTAGCTTACACCAGTCTCCATTTTCAAGCCCAAAGATTACAAAAGGATTGGTTTGCGGACAAGCAGTCTCTGAAATAACTTATATTCACATACGTGAATGCGACAATTTCTCTATGGGAGTGTTTTGCTTCCCTGCAGGAGGAACATTTCCCCTTCATGATCATCCAAATATGACGGTTCTGAGCAAACTCCTCTATGGTTCTGTTCATGTTAAAGCTTATGACTGGGTGAAAGCAGAGAATTCCAGCTGCAGAACAATTGGACTAGCTGGAATTGTGACAAACAGCATCTTCAACGCACCACGCGAGCCATCCATCTTATTCCCAAGGAGCGGTGGAAACATTCATTCCTTCACAGCACTCACTCCTTGTGCCATCTTGGATGTGTTGGCTCCGCCATACAGTGAGGAGTTTGGAAGGCCTTCCACTTACTTTAATGACATGCCAATTCCAACGCTTCCTGGTTACGTCATACTTGAGGAAAGAGATTTGCCAGATGATCTAGTGGTCACTAGAGCACCATATCTTGGCCCTTCCGTTGTCGCTGCTGGGGATGAGCTCATGACTTGTTCATAG 729 0.4513 MDCAIERSKIQVLYDACDAVFSQKELPTFQQIQWLKNLLDLMEAIDVGIDEFSLHQSPFSSPKITKGLVCGQAVSEITYIHIRECDNFSMGVFCFPAGGTFPLHDHPNMTVLSKLLYGSVHVKAYDWVKAENSSCRTIGLAGIVTNSIFNAPREPSILFPRSGGNIHSFTALTPCAILDVLAPPYSEEFGRPSTYFNDMPIPTLPGYVILEERDLPDDLVVTRAPYLGPSVVAAGDELMTCS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0486 242 CDD cupin_ADO 86 186 - -
Vvi18g0486 242 Gene3D Jelly Rolls 9 199 IPR014710 -
Vvi18g0486 242 Pfam PCO_ADO 38 231 IPR012864 GO:0016702
Vvi18g0486 242 SUPERFAMILY RmlC-like cupins 8 199 IPR011051 -
Vvi18g0486 242 PANTHER UNCHARACTERIZED 10 231 IPR012864 GO:0016702
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0486 Vvi-Chr18 4738323 4739988 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0486 K23953 - vvi:100252387 499.204