Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0479 ATGGATCCCCATCAACACCAACCCATTGGACAAGCAGACGAAACCTCGCCCCCTCCCTCCAACACCGCTGCCACTTCATGCCGCTGCTGCGGCGGCCCCACCACATGCCCACCTCCACCGGCATGGTCCGACATCTCTCCGCCACCCTCCTACCGCCCCATCCGCGCCCCCGCCATCAACCTTCCTCCTTCCAACTCTCAACAAGCTATCATCCTAGCCCCCGTTCCTCAAGCCCAGAAGACCCCCGTTGTCTCTCCGCCCTATCTTTTCCAAATCCCCGTCAAGCGAATCCAGACCCCAGACGACATTCGCCATTTCCATGACTCCGATTCCGGCAAGAACTTCTTAGGTTTCGTCGTTTCCCTTAGCGAATCCATTCGCTCCCACAAAATTTCCGACCCTTGCCACCAATCACCAATCCTCAATTCTATTCTCTCCATCCTTCAATCTCTAATCGACTGGGTCGACGAAATACCTCCCGTTCAACAATCTTCCCGTTACGGTAATCTCTCTTTTAGGGTTTGGCAAAGTCGGTTGTTCGATAATAGCGAGCAACTGATGCTCCAATTCCTCCCCGATGATCTGCGGTCAGCTACCGTCGAACTCGTCCCTTACTTTGCCGATAGTTTTGGGAATTCGAGTCGAATCGATTATGGAACCGGTCATGAGACCAATTTTGCTGCGTGGCTTTATTGTTTGGCTAGATTAGGGTTGCTCAAGGAAGAGGATTACCAGGCTCTTGTTTCTAGGGTTTTTGTGAAGTACCTTGAATTGATGAGGAAATTGCAATTCGTCTATTGCCTTGAACCTGCGGGATCCCATGGAGTTTGGGGTCTGGACGACTATCATTTTCTGCCATTTATATTTGGGTCGTCGCAGCTGATCGATCACAAGTATATGAAACCCAAGTCAATTCATAATCAGGATATTCTGGACAACTTCTCCAAGGAGTATATGTATATTTCTTGCATTGCATTTGTGAAGCAGGTGAAGAAAGGCCTATTTGCAGAGCATTCCCCATTGTTAGATGATATCAGTGGTGTACCTAATTGGAACAAAGTGAATAGTGGGATGCTCAAAATGTATAAAGCTGAGGTGTTGGAGAAGGTTCCAATTATGCAGCATTTCCTATTTGGGTGGCTCATCAAATGGGACTAA 1158 0.4862 MDPHQHQPIGQADETSPPPSNTAATSCRCCGGPTTCPPPPAWSDISPPPSYRPIRAPAINLPPSNSQQAIILAPVPQAQKTPVVSPPYLFQIPVKRIQTPDDIRHFHDSDSGKNFLGFVVSLSESIRSHKISDPCHQSPILNSILSILQSLIDWVDEIPPVQQSSRYGNLSFRVWQSRLFDNSEQLMLQFLPDDLRSATVELVPYFADSFGNSSRIDYGTGHETNFAAWLYCLARLGLLKEEDYQALVSRVFVKYLELMRKLQFVYCLEPAGSHGVWGLDDYHFLPFIFGSSQLIDHKYMKPKSIHNQDILDNFSKEYMYISCIAFVKQVKKGLFAEHSPLLDDISGVPNWNKVNSGMLKMYKAEVLEKVPIMQHFLFGWLIKWD* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0479 385 MobiDBLite consensus disorder prediction 1 27 - -
Vvi18g0479 385 Gene3D - 279 385 IPR043170 -
Vvi18g0479 385 FunFam Serine/threonine-protein phosphatase 2A activator 279 385 - -
Vvi18g0479 385 SUPERFAMILY PTPA-like 83 384 IPR037218 GO:0019211
Vvi18g0479 385 Pfam Phosphotyrosyl phosphate activator (PTPA) protein 93 384 IPR004327 GO:0019211
Vvi18g0479 385 CDD PTPA 115 379 IPR004327 GO:0019211
Vvi18g0479 385 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B 77 384 IPR004327 GO:0019211
Vvi18g0479 385 MobiDBLite consensus disorder prediction 9 27 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0479 Vvi-Chr18 4674535 4677996 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0479 K17605 - vvi:100259247 760.755