Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0459 ATGCCCTTGATGACAGAATTACTCACCATCCTTGAAATGGCTAAAAATTTGATCAATCAAATGCCCTTTAAACCGAATGCTGCCATTTGGGGAGCCCTGCTTGCTGCTTGCCGGATCCATGGCAATACAAAATTAGCAGAACTTGCAGTGAAGAATTTGCTTGAGTTGGATGCAGAAGGACCTGGAAGTTATTGCCTTCTAGCCAATATATATTCGGAGTCTGGAAAGATACAAAGTGTTACAAATGTGAGAAAACTGATGAGAGACAAAGGAGTCCGAAAGAATCCTAGTTGCAGCTGGATTGAGGTTGATAATAGGGTACATGTTTTTACTGTAGATGACACAAATCATCCACAAATCAAGGATGTCCATAGAATGTTAGAGGAGATTATAAAGAAGATAGAAGAAATTAAAAACTATGCCAATGTGATGAATTCTGGCAGATCTCATAATTACCATAGTGAGAAGCTTGTTGTGCCACTTCGATTGATTTGA 495 0.3899 MPLMTELLTILEMAKNLINQMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQSVTNVRKLMRDKGVRKNPSCSWIEVDNRVHVFTVDDTNHPQIKDVHRMLEEIIKKIEEIKNYANVMNSGRSHNYHSEKLVVPLRLI* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0459 164 Pfam E motif 40 102 IPR046848 -
Vvi18g0459 164 Gene3D Tetratricopeptide repeat domain 6 107 IPR011990 GO:0005515
Vvi18g0459 164 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 24 112 - -
Vvi18g0459 164 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 11 157 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0459 Vvi-Chr18 4536469 4537082 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0459 4 164 Glycoside Hydrolase AT3G49170 36.111 8.44e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0459 - - vvi:100249582 298.13