Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0454 ATGACAATTTTCAATTGCTTCTCCGCACTGGTTGGGAAGAAGAAGAAGAAAGACAAGGAAGACGAGGAATCTTCAAAAACCGTTGATCACAAAAAGGGAGTTAGAACTATGGAAGTGAAGCTGGAACACCCTTTGAAATCTTCCAAACCAGAGGAGTTAAATACAACTTCTTTTAGTGTCTCAGTACCTTTTGATATCAAGGGGAGTTCTACATGCAAGGTCAAGGTAATGAGCCATGAGAGTCCCATTGAAGGTGAAGCAGTGGAGGTAGCTTATGAAGGAGAAGACGAGCACGAAGATAACTCCTCCATCAAGAGGGAACTCTCGGATTTTGATCTCCAAACCCATGTAGCTAATGCAGGAGAAGAAGAATTTCAATTGAGACACAGAAACATGAATTATTCTGATTCATTTGATATTGAAGTTAATGGACAATTTGAGGACAGAGCCGAGAAGGATGCTGAAAAGGGTGTTGATATGATCCAGAATGGACATGTAAGTGATCCGGGCATACCCAAGGCAGATTTCTGGGCTTCACCCAAGCTTAAGCGCTCCTGTTCTAATTTAGAGTCGAGGGATGTGCTAAAGAAAATAGCTGGACAGTTGCCCCCTTCCAAGTCTCATTCTTTTGAAGAATTGCAGGGTTTAGCCGATGGGGCAAGGGAGGATGTTTTTCCGAGGAATCCTGGCAGCCCAGGGTCTGTATTGAGTCGTCGCAGTGCAGACAGAGTGATGTTGAAGAAGCGCTCTTCAAGCCAAGTTTTGCCTTCAAGGAGTAGAAGATTGTGGTGGAAATTATTCCTTTGGAGCCACAGGAACCTCCACAAACCATGGACTACAAAGCCACGCCCACTTCCCATCGCTGCTGCTTTCAACCAGCAAGGGGGGTACTGTTCGGATACCCTTGAACCAAATCGAGCTCTGCAGTTGAGTGAGCTGGAATCACCTGGATCATTCACCGGCAACAACCACCCAAATGACAACCAGAGCTGGGATGGCTTTCATGGTAGAACTTCTGGTTTATGGCCCCAGAATCACTGGGTTGCTTTCTCGGCAGAATCATCACCCTTTGCAAGAGTTGATGAATGGGTGAAAGATCTGGAAACCCAACCCCCGTTGCCAGTTGACAATGATGACAACAATGTTGAAGATATCATCTTCCCACCGTCTCCTGAGACAGGTAGATCACCGGCTAGAAGTACAGCACACCTGACTCGGCATCCAAATACCAATCTTTCAGAGGAAATATTACATGCCAATAGTGTGATCCAGTCTCTGAATTCTTCTTCAACTGTGGCTCACATCTCTGGTATTGGTTTAAAAGTTATTCCCACCATATCACACTTCTCCAGTCTACGATCAGTCAACTTATCAAGCAACTACATAGTCCATATCACACCTGGATCACTGCCAAAGGGCCTTCACATCCTCAATTTGTCCAGAAACAAGATCAGCACCATTGAAGGACTCAGAGAATTAACCCGATTGCGGGTGCTTGATCTCAGTTACAATCGGATCTCCCGAATTGGGCATGGGTTGTCAAATTGTACGCTTATCAAGGAGCTCTATCTTGCGGGAAACAAGATTAGTGATGTTGAAGCCTTACATCGGCTCTTGAAGCTGACAGTCTTGGACCTTAGCTTCAACAAGATAACCACCACAAAATCGCTGGGCCAACTTGTGGCTAATTACAACTCCTTGCTGGCTCTGAACCTGCTGGGAAATCCAATCCAAAGCAACATCAGTGACGACCAAATCCGCAAGGCAGTTGGCAGTCTCCTCCCAAAGTTAGCTTACCTCAACAAGCAGCCCATCAAACCACAAAGAGCACGAGAGGTGGCCACAGATAGTGTTGCCAAAGCGGCACTTGGGTACAGTGGCCAGAGCTCTCGCCGGAGGGCAGTGAAGAGGGTGAGCCAAGGTGGTTCACTTGTCTCCAGTGGGCATAGGAGCAGTGCGAGTGTTGGGCATAAGAGCAGGACCAGGTCAAAGAGCAGAACCCACCACCAGTCGCCCCTCAAGACTAGTTCATCTGCACTTGCATCATCATCTCGCTAG 2058 0.4694 MTIFNCFSALVGKKKKKDKEDEESSKTVDHKKGVRTMEVKLEHPLKSSKPEELNTTSFSVSVPFDIKGSSTCKVKVMSHESPIEGEAVEVAYEGEDEHEDNSSIKRELSDFDLQTHVANAGEEEFQLRHRNMNYSDSFDIEVNGQFEDRAEKDAEKGVDMIQNGHVSDPGIPKADFWASPKLKRSCSNLESRDVLKKIAGQLPPSKSHSFEELQGLADGAREDVFPRNPGSPGSVLSRRSADRVMLKKRSSSQVLPSRSRRLWWKLFLWSHRNLHKPWTTKPRPLPIAAAFNQQGGYCSDTLEPNRALQLSELESPGSFTGNNHPNDNQSWDGFHGRTSGLWPQNHWVAFSAESSPFARVDEWVKDLETQPPLPVDNDDNNVEDIIFPPSPETGRSPARSTAHLTRHPNTNLSEEILHANSVIQSLNSSSTVAHISGIGLKVIPTISHFSSLRSVNLSSNYIVHITPGSLPKGLHILNLSRNKISTIEGLRELTRLRVLDLSYNRISRIGHGLSNCTLIKELYLAGNKISDVEALHRLLKLTVLDLSFNKITTTKSLGQLVANYNSLLALNLLGNPIQSNISDDQIRKAVGSLLPKLAYLNKQPIKPQRAREVATDSVAKAALGYSGQSSRRRAVKRVSQGGSLVSSGHRSSASVGHKSRTRSKSRTHHQSPLKTSSSALASSSR* 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0454 685 MobiDBLite consensus disorder prediction 13 49 - -
Vvi18g0454 685 MobiDBLite consensus disorder prediction 629 685 - -
Vvi18g0454 685 Gene3D Ribonuclease Inhibitor 398 510 IPR032675 -
Vvi18g0454 685 Pfam Leucine Rich repeat 540 552 IPR001611 GO:0005515
Vvi18g0454 685 ProSiteProfiles Leucine-rich repeat profile. 540 561 IPR001611 GO:0005515
Vvi18g0454 685 FunFam Outer arm dynein light chain 1 protein 398 511 - -
Vvi18g0454 685 Pfam Leucine rich repeat 451 506 IPR001611 GO:0005515
Vvi18g0454 685 SMART LRR_typ_2 538 560 IPR003591 -
Vvi18g0454 685 SMART LRR_typ_2 449 472 IPR003591 -
Vvi18g0454 685 SMART LRR_typ_2 493 516 IPR003591 -
Vvi18g0454 685 ProSiteProfiles Leucine-rich repeat profile. 473 494 IPR001611 GO:0005515
Vvi18g0454 685 MobiDBLite consensus disorder prediction 218 242 - -
Vvi18g0454 685 MobiDBLite consensus disorder prediction 13 53 - -
Vvi18g0454 685 MobiDBLite consensus disorder prediction 655 669 - -
Vvi18g0454 685 FunFam Outer arm dynein light chain 1 protein 512 610 - -
Vvi18g0454 685 MobiDBLite consensus disorder prediction 632 654 - -
Vvi18g0454 685 MobiDBLite consensus disorder prediction 369 405 - -
Vvi18g0454 685 ProSiteProfiles Leucine-rich repeat profile. 495 517 IPR001611 GO:0005515
Vvi18g0454 685 Gene3D Ribonuclease Inhibitor 511 611 IPR032675 -
Vvi18g0454 685 ProSiteProfiles Leucine-rich repeat profile. 518 539 IPR001611 GO:0005515
Vvi18g0454 685 PANTHER NISCHARIN RELATED 227 675 - -
Vvi18g0454 685 MobiDBLite consensus disorder prediction 670 685 - -
Vvi18g0454 685 SUPERFAMILY Outer arm dynein light chain 1 440 607 - -
Vvi18g0454 685 SMART LRR_sd22_2 538 559 - -
Vvi18g0454 685 SMART LRR_sd22_2 471 492 - -
Vvi18g0454 685 SMART LRR_sd22_2 516 537 - -
Vvi18g0454 685 SMART LRR_sd22_2 493 515 - -
Vvi18g0454 685 MobiDBLite consensus disorder prediction 314 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0454 Vvi-Chr18 4484213 4486627 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0454 444 605 Receptor kinase-like Gene Family AT5G56040 32.222 1.11e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0454 - - vvi:100252301 1304.66