Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0448 ATGTCAGGAGGTGGGTGTAGCATTGTTTGGTTCAGGAGAGATCTGAGGGTTGAGGATAATCCTGCACTAGCAGCTGGTGTGAGAGCAGGGGCTGTGATTCCTGTGTTTATATGGGCACCTGAAGAGGAAGGCCCCTATTACCCTGGGAGGGTCTCAAGATGGTGGCTCAAGCAGAGTTTGGCTCACCTTGATTCCTCTTTGAGGAGCCTTGGCACTCCTCTCATCACCAAGAGATCTACTGACTGCGTTTCTTCTCTCCTTGAGATTGTCAAATCTACCGGAGCTACTCTTCTCTTCTTCAATCATTTGTATGATCCCTTGTCACTTGTCAGGGATCACCGGGCAAAGGAGGCTTTAACTGCTCAAGGCATAGCTGTACATTCCTTTAACGCGGATTTGCTGTATGAACCATGGGATGTTAATGATGCCCAGGGCCACTCATTCACAACCTTCTCAGCTTTCTGGGACAGATGCCTTAGCATGCCCTATGACCCTGAGGCACCTCTCCTTCCTCCCAAAAGGATTAACCCGGGTGACGTGTCAAGGTGCCCCTCAGACACAATTGCATTTGAAGATGAATCTGAGAAGGGTAGCAATGCACTTCTTGCTCGAGCATGGACACCTGGATGGAGCAACGCTGATAAGGCCCTAACCATATTCATTAATGGACCATTAATTGAGTATTCTAAGAATAGTAGGAAGGCTGATAGTGCTACAACCTCATTTCTCTCTCCCCATTTGCATTTTGGGGAGGTGAGTGTGAGGAAAGTATTCCATCTTGTCCGCATCAAGCAGGTACTGTGGGCCAACGAAGGGAACAAGGCTGGTGAAGAGAGTGTGAACTTGTTCCTTAAGTCCATTGGGCTTAGGGAATATTCAAGATACTTGAGTTTTAACCATCCTTACAGTCATGAAAGGCCACTTCTTGGACACCTGAAGTTCTTCCCTTGGGTTGTTGATGAAGGCTATTTTAAGGCATGGAGACAAGGTAGAACTGGATATCCATTGGTGGATGCTGGCATGAGAGAGCTATGGGCCACCGGTTGGATGCATGATCGGATAAGGGTTGTGGTTTCTAGTTTTTTTGTGAAGGTTTTGCAGCTTCCATGGCGGTGGGGAATGAAGTATTTCTGGGATACACTGTTGGATGCAGATCTTGAGAGTGATGCTCTTGGTTGGCAGTATATATCTGGTACTCTCCCTGATGGCCGTGAGTTTGATCGCATAGACAATCCACAGTTTGAGGGTTACAAATTCGACCCTAATGGAGAATATGTACGAAGGTGGCTCCCTGAACTTGCTAGGCTTCCTACTGAATGGATACACCACCCATGGAATGCACCAGAATCTGTACTCCAAGCTGCTGGAATTGAGTTGGGGTCAAACTACCCTCTCCCTATTGTAGAGATAGATGCAGCAAAAGCCAGGTTGCAAGAAGCACTTTCAGAGATGTGGCAAGCAGTAGCAGCTTCAAGAGCTGCAATTGAGAATGGAACCGAGGAGGGCCTTGGAGACTCTGAATCAGCCCCAATTGCCTTTCCTCAAGACGTACAAATGGAGGAGATTCCTGAGCCTGTGAGGAACAACCCTACCACTACTGCAGTTAGACGCTATGAGGATCAGATGGTTCCAAGCATGACTTCTTCTTTTCTAAGGATTGAAGGAGAACCATCTTTGGACATTCAAAATTCAGCAGAAAATAGCAGAGCAGAAGTCCCAACAAATGTTAATGCAAATCAAGAACCAAGAAGGGAAACTCTTAACCGAGGGGTTACACACTCAGTTCGAAGCAACAACCACAACCTGCCACAATTTAATATTATGATAGGGCGGAATACTGCTGAAGATTCCACAGCAGAATCTTCAAGCACCACAAGGAGAGAGAGGGATGGAGGTGTAGTTCCAGTTTGGTCTCCCTCAACTTCTAGTTATGCAGAGCAGTTTGTGAGTGAAGAGAATGGCATTGGAACCAGTTCATCTTACTTGCAGAGGCATCCACGGTCTCACCAGTTAATGAATTGGAAGCAACTTTCTCAAACTGGGTAA 2046 0.4673 MSGGGCSIVWFRRDLRVEDNPALAAGVRAGAVIPVFIWAPEEEGPYYPGRVSRWWLKQSLAHLDSSLRSLGTPLITKRSTDCVSSLLEIVKSTGATLLFFNHLYDPLSLVRDHRAKEALTAQGIAVHSFNADLLYEPWDVNDAQGHSFTTFSAFWDRCLSMPYDPEAPLLPPKRINPGDVSRCPSDTIAFEDESEKGSNALLARAWTPGWSNADKALTIFINGPLIEYSKNSRKADSATTSFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWMHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGEYVRRWLPELARLPTEWIHHPWNAPESVLQAAGIELGSNYPLPIVEIDAAKARLQEALSEMWQAVAASRAAIENGTEEGLGDSESAPIAFPQDVQMEEIPEPVRNNPTTTAVRRYEDQMVPSMTSSFLRIEGEPSLDIQNSAENSRAEVPTNVNANQEPRRETLNRGVTHSVRSNNHNLPQFNIMIGRNTAEDSTAESSSTTRRERDGGVVPVWSPSTSSYAEQFVSEENGIGTSSSYLQRHPRSHQLMNWKQLSQTG* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0448 681 Gene3D HUPs 8 206 IPR014729 -
Vvi18g0448 681 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 192 486 IPR036134 -
Vvi18g0448 681 Gene3D - 134 293 - -
Vvi18g0448 681 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Vvi18g0448 681 PANTHER CRYPTOCHROME 6 489 IPR002081 -
Vvi18g0448 681 NCBIfam cryptochrome photoreceptor 6 482 IPR014134 GO:0009785|GO:0009882
Vvi18g0448 681 MobiDBLite consensus disorder prediction 564 585 - -
Vvi18g0448 681 MobiDBLite consensus disorder prediction 611 639 - -
Vvi18g0448 681 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Vvi18g0448 681 Pfam FAD binding domain of DNA photolyase 283 481 IPR005101 -
Vvi18g0448 681 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Vvi18g0448 681 FunFam Deoxyribodipyrimidine photo-lyase 301 489 - -
Vvi18g0448 681 Pfam Blue/Ultraviolet sensing protein C terminal 509 626 IPR020978 -
Vvi18g0448 681 PRINTS DNA photolyase signature 332 348 IPR002081 -
Vvi18g0448 681 PRINTS DNA photolyase signature 352 370 IPR002081 -
Vvi18g0448 681 PRINTS DNA photolyase signature 391 405 IPR002081 -
Vvi18g0448 681 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Vvi18g0448 681 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 177 IPR036155 -
Vvi18g0448 681 Pfam DNA photolyase 7 163 IPR006050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0448 Vvi-Chr18 4433614 4439601 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0448 K12118 - vvi:100254022 1386.32