Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0445 ATGCCGGGTCTGGAGGTCTGGTTCCGGGATTGGATTTCACATGAACAATCTCAGATTCTTGTTTCCGATCCGGATTCGGTTTTATTTGCTAATGGAGGATTATTTCTGGAACCGACCATTCCTTCTTCATTTGTGCATTTGATTTCTTTGAGGAGTTCTTCTACCGGTGTTTCGAGTTCATTTGATTGTTCTTCTGTTCATCGTCGGAAACAGGTGGTTTTAGGGGGTTGCCGGCGAGAAAGAAGGGTTCCAGAGGCGTTTGGAGGTGGGTTTTTGTCGGTGAGCTTGAGAAGTGATGGATTTGCACAAGAGTCAACGGGATGTTTGGTCCGAAACGGAGATAAGGGCTCCGAGGAGGCGGCCAGATTCCAGGGAGGTAACGTGGTCGTTGAGGAAGGTGAGAAACAGGATGAAGTTAGGGTAGGGGGTACGAGTGCGATGAACACCACGAAGCATCTATGGGCGGGTGCCCTTGCCGCCATGGTTTCAAGAACTTTTGTTGCCCCGCTGGAGAGACTAAAGCTGGAATATATAGTTCGTGGTGAACAGAAGCATTTATTTGAGCTCATCAAGACAATTGCTAGCTCTCAAGGCTTGAGAGGCTTTTGGAAGGGGAATTTTGTGAACATTCTTCGAACTGCTCCATTTAAGGCAGTTAATTTTTATGCTTATGACACATACAGAAAGCAACTGCTCAAATTTTCTGGAAATGAGGAAACCACAAATTTTGAGAGGTTTATTGCTGGTGCTGCAGCTGGAATTACTGCTACCATACTCTGCTTACCATTGGATACCATCCGGACCAAGATGGTGGCACCTGGTGGTGAAGCCTTGGGTGGTGTTATTGGCACTTTCCGCCATATGATCCAAACTGAAGGATTCTTCTCCCTTTACAAGGGTTTGGTGCCTTCCATTATAAGTATGGCACCTTCAGGTGCAGTTTTCTATGGTGTGTATGATATATTGAAATCAGCTTACTTGCATTCACCAGAAGGCAGGAAAAGAATTCAGAACATGAGCCAACAGGGCCAAGAACTGAATGTGTTAGACCAGCTAGAGTTGGGACCAATCAGAACATTGCTGTATGGGGCTGTTGCTGGTGCTTGTGCAGAAGCTGCCACCTACCCTTTTGAAGTTGTGAGGAGACAGCTTCAACTGCAAGTCCAGGCAACTAAGTTGAGTGCATTGGCAACTTGTGTCAAGATAGTCGAACATGGAGGTGTTCCAGCTCTCTATGCAGGACTTATTCCCAGCTTACTACAGGTACTACCTTCAGCTTCGATAAGTTATTTTGTTTACGAGTTCATGAAGATTGTTCTCAAAGTGGAATGA 1332 0.458 MPGLEVWFRDWISHEQSQILVSDPDSVLFANGGLFLEPTIPSSFVHLISLRSSSTGVSSSFDCSSVHRRKQVVLGGCRRERRVPEAFGGGFLSVSLRSDGFAQESTGCLVRNGDKGSEEAARFQGGNVVVEEGEKQDEVRVGGTSAMNTTKHLWAGALAAMVSRTFVAPLERLKLEYIVRGEQKHLFELIKTIASSQGLRGFWKGNFVNILRTAPFKAVNFYAYDTYRKQLLKFSGNEETTNFERFIAGAAAGITATILCLPLDTIRTKMVAPGGEALGGVIGTFRHMIQTEGFFSLYKGLVPSIISMAPSGAVFYGVYDILKSAYLHSPEGRKRIQNMSQQGQELNVLDQLELGPIRTLLYGAVAGACAEAATYPFEVVRRQLQLQVQATKLSALATCVKIVEHGGVPALYAGLIPSLLQVLPSASISYFVYEFMKIVLKVE* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0445 443 Gene3D Mitochondrial carrier domain 143 442 IPR023395 -
Vvi18g0445 443 FunFam Mitochondrial substrate carrier family protein 146 443 - -
Vvi18g0445 443 PRINTS Mitochondrial carrier protein signature 165 179 IPR002067 GO:0055085
Vvi18g0445 443 PRINTS Mitochondrial carrier protein signature 363 385 IPR002067 GO:0055085
Vvi18g0445 443 PRINTS Mitochondrial carrier protein signature 255 273 IPR002067 GO:0055085
Vvi18g0445 443 PRINTS Mitochondrial carrier protein signature 152 165 IPR002067 GO:0055085
Vvi18g0445 443 PRINTS Mitochondrial carrier protein signature 205 225 IPR002067 GO:0055085
Vvi18g0445 443 PRINTS Mitochondrial carrier protein signature 298 316 IPR002067 GO:0055085
Vvi18g0445 443 Pfam Mitochondrial carrier protein 354 440 IPR018108 -
Vvi18g0445 443 Pfam Mitochondrial carrier protein 148 233 IPR018108 -
Vvi18g0445 443 Pfam Mitochondrial carrier protein 240 327 IPR018108 -
Vvi18g0445 443 ProSiteProfiles Solute carrier (Solcar) repeat profile. 147 230 IPR018108 -
Vvi18g0445 443 SUPERFAMILY Mitochondrial carrier 146 436 IPR023395 -
Vvi18g0445 443 ProSiteProfiles Solute carrier (Solcar) repeat profile. 240 325 IPR018108 -
Vvi18g0445 443 ProSiteProfiles Solute carrier (Solcar) repeat profile. 354 439 IPR018108 -
Vvi18g0445 443 PANTHER SOLUTE CARRIER FAMILY 25 143 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0445 Vvi-Chr18 4399564 4405066 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0445 111 422 Organic Solute Cotransporters AT5G64970 75.962 1.16e-169 480
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0445 - - vvi:100255796 836.254