Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0440 ATGGCAGTGGGGGGTTTCGCCGTTGACGACAATTCCAGGGCCTTCAGTGGCAAGGTAACAGCGTCGGTGGTGATCACCTGCATCGTTGCCGCATCTGGTGGCCTTATTTTTGGGTATGACATCGGAATTTCAGGAGGTGTAACAACGATGCAACCCTTTCTTAAGAAATTCTTCCCGGTGGTACTGAGGAAAGCGGCGGACGCCAAGACCAACATATACTGTGTGTATGACAGCCACGTCTTAACAGCATTCACATCCTCACTGTACATAGCGGGGTTAGCAGCGTCCCTGGTGGCTAGTCGCCTCACCAGAGCAGTGGGACGTAGAAACACAATGATAATTGGTGGTTTGACTTTCCTGATTGGCGCTGCTCTCAATGGTGGGGCCGAAAATGTTGCCATGCTCATCTTGGGCCGTATATTGCTGGGATTTGGTGTTGGTTTCACTAACCAGGCAACCCCTATCTACCTCTCGGAGATGGCGCCACCGAAATGGCGCGGTGCTTTCGGCACAAGTTTTCAATTCTTCATAGGCATAGGGGTGGTGGTAGCCAATTGCCTAAATTATGGCACCGCTAAGATCAGCTGGGGGTGGCGCCTCTCCCTCGGCCTTGCGATTGTGCCCTCGGTAATCATGACTGTGGGTGCACTACTTATCTCAGACACCCCAAGTAGCCTTGTGGAACGTGGGAAGGTGGCCCAAGCTCGCGACTCTCTCCGTAAAGCCCGAGGAAAAGACATCGACATCGAACCTGAGCTGGCTGAGCTAGTGAAGACGAGCGAAGCAGTCAAAGCTGCAAATGAAGAGCCGTTCGTTACTATATTCGAAAGGCAGTATCGGCCGCACCTAGTGATGGCCTTTGCCATTCCTTTCTTTCAGCAGCTCACTGGGATTAACATCATCGCCTTCTACGCGCCGGTCCTCTTTCAATCTGTGGGATTTGGAAGCGACTCGGCTCTGATAGCCTCCATAATACTGGGATGTGTGAACCTTTTGTCCATCATTGTGTCTACATTTATAGTTGATCGATATGGCAGAAGAATTCTGTTCCTGGAGGGTGGAACTCAGATGATCATCGGTCAGGTGGCGGTGGCGTGTGTGCTAGCAGTAACTACGGGCGTTTCGGGAACAAAGGACATACCCAGGGGGTACGCGGTGTTGGTACTGGTACTTATGTGCATCTATGCAGCTGGTTTTGGTTGGTCATGGGGTCCTCTGAGCTGGCTCATTCCCAGTGAGATTTTTCCTATGAAAATCCGCACAACCGGCCAAGCTATAAGCGTTGCCGTCAACTTCGCAACAACCTTCGTGCTAGCCCAGACATTCTTGACCATGCTGTGCCACTTTAAATACGGCACTTTCCTCTTCTATGCCGGTTGGCTCATTGCAATGACCCTTTTCGTAATACTTTTCGTGCCGGAGACCAAAGGTATTCCTCTAGAATCCATGTATCAAGTTTGGGAGAGGCATTGGTTCTGGCGGAGGTTTGTTTCTCTGCCATAG 1503 0.511 MAVGGFAVDDNSRAFSGKVTASVVITCIVAASGGLIFGYDIGISGGVTTMQPFLKKFFPVVLRKAADAKTNIYCVYDSHVLTAFTSSLYIAGLAASLVASRLTRAVGRRNTMIIGGLTFLIGAALNGGAENVAMLILGRILLGFGVGFTNQATPIYLSEMAPPKWRGAFGTSFQFFIGIGVVVANCLNYGTAKISWGWRLSLGLAIVPSVIMTVGALLISDTPSSLVERGKVAQARDSLRKARGKDIDIEPELAELVKTSEAVKAANEEPFVTIFERQYRPHLVMAFAIPFFQQLTGINIIAFYAPVLFQSVGFGSDSALIASIILGCVNLLSIIVSTFIVDRYGRRILFLEGGTQMIIGQVAVACVLAVTTGVSGTKDIPRGYAVLVLVLMCIYAAGFGWSWGPLSWLIPSEIFPMKIRTTGQAISVAVNFATTFVLAQTFLTMLCHFKYGTFLFYAGWLIAMTLFVILFVPETKGIPLESMYQVWERHWFWRRFVSLP* 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0440 500 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 14 497 IPR045262 GO:0015144
Vvi18g0440 500 CDD MFS_STP 29 474 IPR044778 GO:0015145|GO:0015749
Vvi18g0440 500 ProSiteProfiles Major facilitator superfamily (MFS) profile. 26 476 IPR020846 GO:0022857
Vvi18g0440 500 Pfam Sugar (and other) transporter 27 487 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vvi18g0440 500 ProSitePatterns Sugar transport proteins signature 2. 141 166 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vvi18g0440 500 PRINTS Sugar transporter signature 34 44 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi18g0440 500 PRINTS Sugar transporter signature 136 155 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi18g0440 500 PRINTS Sugar transporter signature 389 410 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi18g0440 500 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi18g0440 500 PRINTS Sugar transporter signature 412 424 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vvi18g0440 500 FunFam Sugar transport protein 13 16 490 - -
Vvi18g0440 500 Gene3D MFS general substrate transporter like domains 16 490 IPR036259 -
Vvi18g0440 500 SUPERFAMILY MFS general substrate transporter 27 482 IPR036259 -
Vvi18g0440 500 NCBIfam sugar porter family MFS transporter 20 482 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0440 Vvi-Chr18 4363813 4368849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0440 50 496 Organic Solute Cotransporters AT1G34580 67.111 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0440 K24193 - vvi:100232961 984.941