Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0437 ATGTCTAAACGAGCTGGGAAAGAAAAGGAGAGTGAGGAGAACATGGAGAGGGAGGGAGATATTGAAAGCATGTTGAATGAGATCCCTAACGCAAGTTCTCATAACCTCCTTCATCATCTGCTTAAGAGTCTTTCACCTGTTAGTTCAAGTTCTGTTTCTAATGGGTTTGATGTCGGATTATCATATTCCGCTCCGTTTGAGGAGCCTAAGTATCAGACACCGACTAACCATTACCAGAGTAGACTGCCGGTGTATTCAGAATTATCGAATTCTCGTGATGGTAAGAAAGAGAATATGTTTGACGGAGTGGCTTTGTCTGGAAATTTCCAGAGAATGCATATTGGTGATGAACGAAATGGTTTTTCCAGGAATGAACATGTTCCAATGGACCCAAATCGGTTTGGGTTTGACTTTGGAGGTTGTGCTTCAAATGGGAGCATTCCCTACTATATTGCAAATGGTCCATATGAAGATTTTGACTCTGATTTTTCTGATTATGGAGGGTTTCAATCGTCCATTCATGGAGTTCCTGCCAGTTTCAATAGTCATGATATGAACTCAAGACTCCATTTGCAAAAGGAATCTAGAGTGGGTAATTTAATGGGGTCTAATATCTTTAATAATCAGTCTAATGCTTTCTGTTCTAACCCCAGTGTCTATAAAAGAAATATGGATTATCTAATGGAGCTTGGAAATGAACTGGGAAGCGGCTGTTTTAATGGGGGAATTCAATTACAGAGTCCATCTATGAGCAAGTCTTACCTCAAAGATAATGTTGTCTGGTCGCAGCAATGCCGAATATATTCTAATATAGACAGGGATGCCTTGAATCCACTCGATTCTTCTCAGTTGATACAACCCAAGTTGGCTTTGGGTTGCGGCCATCCTCTCTACAATCAAAGGGTGCTTAGTGCAATCCCAAACAGTCGGGTTTCTCAATCTCTTTGGTCACCAGAGAAAGGTGATGTTGAGGCTTTTAACTGTGAGGATAGTTTCATAATACGGGGTAAAAATCTGAATTATGTCATCAAGAATGAGTGTGACAGTTGGAAGGGTGGTTACAAGAAGACTTCTCACAATGAAATTCTTATGCATAACCTGCGAGAGAAGGGTGAAGAAGTAGATTGTCAATTATATTCAAGAAGAATTTGTGGAAGCAGCCAGGGTCGGAGGAGTTCTTCCCAATTGCTTCTGCATCCAAATTATTGTTCCTTGGCAGAGGCCCAAGGTTGTATATACTCCTTGGCTAAGGATCACAATGGCTGTCGTTTTCTTCAGAGGATGTTTGATGGAGCAACAGTTGAAGATGTGCAGCTAGTATTTAATGAAACTATCAAGCATGTTGTTGAACTTATGATGAATCCTTTTGGAAATTACCTTATGCAGAAGTTGTTCGATGTGTGCAATGAAGACCAAAGAATGCAGATTGTGCTTGCATTGACAGAAGAACCAGGGGAGCTTGTGAGGATTTCCTTAAATGCGCATGGCACTCGAGTGGTGCAGAAGTTGGTGATGACTCTCAAAACAAGGCAGCAGATTTCATTAGTTGTATTAGCCCTTGAGCCATATTTTCTTGATCTCACTAAGGATCATCATGGAAATCATGTGGTGCAGCGGTGTTTGGAATACCTTAGCTGTGAAGACATTAAGTTTTTTTTTTATGATGCTGCTAAGTATTGTGTTGATATTGCAACTCATCGCCATGGGTGTTGTGTTCTCCAACGATGCATTACTCGTTCAACTGGGAAACATGGTGAGAAGTTGGTTGCAGAAATTTCTGCCAATGGACTCCTCCTGGCTCAAGATGATTTTGGGAATTATGTAATTCAATACATAATAGAGCTAAAAATCCCATCTGCCATAGCCAGCTTGATGTCTCAGTTCGAAGGGAACTATGTGCACCTGTCTATGCAGAAATTCAGCAGCCATGTGGTTGAAAAATGCCTCAAGCATCTTGAAGAGAGCAGGCCAAGAATCGTCCATGAATTTCTCTCAGTACCTCACTTTGAACAGTTGATGCAAGATCCATTTGCCAACTATGTCATTCAATCTGCACTTGAAGTCACAAAGGGTCCTCTCCATGCCTCATTGATTGAAGCAGTCCGACCCCATATAATCTTACGCACCAGCCCATATTGCAAGAAGATTTTCTCACGTACTCTCTTCAAGAAGTGA 2175 0.4124 MSKRAGKEKESEENMEREGDIESMLNEIPNASSHNLLHHLLKSLSPVSSSSVSNGFDVGLSYSAPFEEPKYQTPTNHYQSRLPVYSELSNSRDGKKENMFDGVALSGNFQRMHIGDERNGFSRNEHVPMDPNRFGFDFGGCASNGSIPYYIANGPYEDFDSDFSDYGGFQSSIHGVPASFNSHDMNSRLHLQKESRVGNLMGSNIFNNQSNAFCSNPSVYKRNMDYLMELGNELGSGCFNGGIQLQSPSMSKSYLKDNVVWSQQCRIYSNIDRDALNPLDSSQLIQPKLALGCGHPLYNQRVLSAIPNSRVSQSLWSPEKGDVEAFNCEDSFIIRGKNLNYVIKNECDSWKGGYKKTSHNEILMHNLREKGEEVDCQLYSRRICGSSQGRRSSSQLLLHPNYCSLAEAQGCIYSLAKDHNGCRFLQRMFDGATVEDVQLVFNETIKHVVELMMNPFGNYLMQKLFDVCNEDQRMQIVLALTEEPGELVRISLNAHGTRVVQKLVMTLKTRQQISLVVLALEPYFLDLTKDHHGNHVVQRCLEYLSCEDIKFFFYDAAKYCVDIATHRHGCCVLQRCITRSTGKHGEKLVAEISANGLLLAQDDFGNYVIQYIIELKIPSAIASLMSQFEGNYVHLSMQKFSSHVVEKCLKHLEESRPRIVHEFLSVPHFEQLMQDPFANYVIQSALEVTKGPLHASLIEAVRPHIILRTSPYCKKIFSRTLFKK* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0437 724 ProSiteProfiles Pumilio RNA-binding repeat profile. 519 554 IPR001313 GO:0003723
Vvi18g0437 724 MobiDBLite consensus disorder prediction 1 27 - -
Vvi18g0437 724 FunFam Pumilio homolog 9 395 724 - -
Vvi18g0437 724 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 385 724 IPR033133 GO:0003723
Vvi18g0437 724 ProSiteProfiles Pumilio RNA-binding repeat profile. 591 626 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 559 593 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 668 698 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 524 550 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 412 443 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 447 480 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 631 662 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 488 510 IPR001313 GO:0003723
Vvi18g0437 724 Pfam Pumilio-family RNA binding repeat 599 614 IPR001313 GO:0003723
Vvi18g0437 724 CDD Pumilio 410 719 IPR033712 GO:0003723
Vvi18g0437 724 ProSiteProfiles Pumilio RNA-binding repeat profile. 482 518 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 591 626 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 664 699 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 627 661 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 407 442 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 555 590 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 482 517 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 443 478 IPR001313 GO:0003723
Vvi18g0437 724 SMART pum_5 519 554 IPR001313 GO:0003723
Vvi18g0437 724 SUPERFAMILY ARM repeat 405 719 IPR016024 -
Vvi18g0437 724 ProSiteProfiles Pumilio RNA-binding repeat profile. 407 442 IPR001313 GO:0003723
Vvi18g0437 724 ProSiteProfiles Pumilio RNA-binding repeat profile. 662 699 IPR001313 GO:0003723
Vvi18g0437 724 ProSiteProfiles Pumilio RNA-binding repeat profile. 443 479 IPR001313 GO:0003723
Vvi18g0437 724 MobiDBLite consensus disorder prediction 1 23 - -
Vvi18g0437 724 Gene3D - 399 722 IPR011989 -
Vvi18g0437 724 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 150 719 - -
Vvi18g0437 724 ProSiteProfiles Pumilio RNA-binding repeat profile. 555 590 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0437 Vvi-Chr18 4331692 4337441 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0437 - - vvi:100257510 1406.35