Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0424 ATGGACAACATAATCAACAAGCTTCGGAACTTGGATGCTTACCCTAAGATCAACGAGGATTTCTACAGCCGTACACTCTCCGGTGGCGTTATTACCCTCGCCTCATCTATTTTTATGCTCTTGCTCTTCATCTCCGAGCTCAGGTTATATCTCCATGCTGTAACAGAAACAAAGCTTGTTGTAGATACTTCAAGAGGAGAAACACTACGTATCAATTTTGATGTCACTTTTCCTGCCCTTCCATGTTCCATACTCAGTCTTGATGCCATGGATATAAGTGGAGAGCAACATCTTGATGTGAGACATGACATAATCAAGAAAAGAATAGATGCCCATGGCAGTGTTATAGAAGCAAGGCAGGATGGGATTGGTTCTCCTAAGATTGAAAAGCCTTTACAGAAACATGGAGGCAGGCTTGAGCATAACGAAACGTATTGTGGGTCATGTTATGGTGCAGAAGCGTCAGATGATGATTGTTGTAATAACTGTGAAGAAGTTCGTGAAGCATACCGGAAGAAAGGTTGGGCGATGTCAAATCCAGATTTGATTGACCAGTGCAAGAGAGAAGGTTTTCTGCAAAGGATTAAAGATGAAGAAGGTGAAGGGTGTAATATATATGGATTCTTGGAAGTTAATAAGGTTGCTGGGAATTTCCATTTTGCACCTGGGAAAAGCTTTCAACAATCAAATATTCATGTACACGATCTGCTGGCATTTCAAAAGGATAGCTTTAATATTAGTCACAAGATCAACAGGTTAGCTTTTGGAGACTATTTCCCTGGTGTTGTGAATCCTCTCGATGGTGTGCAATGGATACAGGCAACTCCAAGTGGGATGTATCAGTATTTCATCAAGGTTGTACCCACTGTATATACACATGTGAGTGGGCACACTATCTCAACAAATCAGTTCTCTGTTACAGAACATTTTAGGAATGCAGAACTAGGTCGCCTTCAGTCTCTTCCTGGAGTTTTCTTCTTCTATGACCTTTCTCCAATCAAGGTGACTTTCACAGAGGAGCATGTGTCATTCTTGCACTTCCTAACAAATGTCTGTGCCATAGTTGGAGGTGTTTTCACTGTTTCAGGGATATTAGATTCCTTCATATACCATAGTCAAAAGGCAATCAAGAAGAAGATAGAAATTGGTAAATTTAGTTGA 1161 0.4065 MDNIINKLRNLDAYPKINEDFYSRTLSGGVITLASSIFMLLLFISELRLYLHAVTETKLVVDTSRGETLRINFDVTFPALPCSILSLDAMDISGEQHLDVRHDIIKKRIDAHGSVIEARQDGIGSPKIEKPLQKHGGRLEHNETYCGSCYGAEASDDDCCNNCEEVREAYRKKGWAMSNPDLIDQCKREGFLQRIKDEEGEGCNIYGFLEVNKVAGNFHFAPGKSFQQSNIHVHDLLAFQKDSFNISHKINRLAFGDYFPGVVNPLDGVQWIQATPSGMYQYFIKVVPTVYTHVSGHTISTNQFSVTEHFRNAELGRLQSLPGVFFFYDLSPIKVTFTEEHVSFLHFLTNVCAIVGGVFTVSGILDSFIYHSQKAIKKKIEIGKFS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0424 386 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 8 97 IPR039542 -
Vvi18g0424 386 Pfam Endoplasmic reticulum vesicle transporter 149 366 IPR012936 -
Vvi18g0424 386 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 6 385 IPR045888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0424 Vvi-Chr18 4225849 4241260 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0424 K20367 - vvi:100250637 789.645