Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0422 ATGGCAGAGTTTCAGAACCCTGATTTGGAATACGTTGTTGATGACTACTACGACATGACCGATTTTGAAGAAGACTCTTTTTCTGAGACCGATCCACAGAGGAACAGTCCCTTTGAGGCTTTCGACTCGGACGTTGAAGACAACTTTGAAATGAACAAGCCAAAGACTGATACCTCTGCTCTGGAAGCTAGAAATGGGAAAGATATACAGGGAATTCCCTGGGAGAGGCTTAATTTTACTAGAGATAAGTATCGGGAGACAAGATTGGAACAATACAAGAATTATGAGAACCTATCGCGCCCTCGGGAAGAGCTTGAAAAGGACTGCAAGAAAATAGAGAAGGGAAGCACCTTCTATGATTTTCAGTTCAACACAAGGCTTGTCAAGTCAACCATTGTGCATTTCCAGCTGAGGAATTTGTTATGGGCAACATCGAAGCATGATGTATACCTTATGCAGAACTACTCAGTAATGCACTGGTCCTCATTGCTGAGGAGGGGTAAAGAAGTACTAAACGTGGCTAAACCAATTGTTTCCACACTGTGCCCAGGATCTTTGGGGCAGTCACTCTCAAGAGTGCAGATAAGCACTATGACCGTTAAAGAGAACTTAATGGTGGCAGGTGGTTTTCAGGGAGAGCTTATTTGCAAGAATTTGAGTCAGCCTGGGGTTGCATTTTGTGCAAAATTAACCACAGATGATAATGCCATCACCAATGCGGTTGATGTATACCATAACCCCAATGGCTCGTTGAGGGTCATGGCTGCAAACAACGACGCTGAAGTTAGGATCTTTGATGCTGAGAACTTCGCTTGCCTTAATCGGTTCACCTACCCTTGGTCTGTAAATAACACCTCTGTTAGCCCAGATGGAAAGCTGCTAGCTGTCCTTGGTGATAGTGCAGAGTGCTTGCTAGCTGATGCTCAGACAGGGAAAGTTGTTGCAACCCTTAAGGGGCACTTGGACTATTCGTTTGCTTCAGCTTGGCACCCAGATGGACGAACATTGGCGACTGGAAACCAGGACACAACATGTAGACTCTGGGACATACGGAACCTTTCCGAGTCTCAGGCGGTACTTAAGGGAAGGATGGGAGCAATACGAGCTGTGAGGTTCTCTTCAGATGGTCGATTTATGGCTATGGCTGAGCCTGCAGACTTTGTCCATGTCTTTGACACGGAGTCAGGTTATGTGAAGGGGCAGGAGATTGATCTTTTTGGCGAGATTGCTGGAATATCCTTCAGTCCTGACACAGAAGCTCTTTTTGTTGGGATTGCGGATCGCACCTACGGTAGCTTATTAGAATTCAACAGGAGGAGGTGTAATCAGTATTTGGATTCCATTATATAG 1350 0.4548 MAEFQNPDLEYVVDDYYDMTDFEEDSFSETDPQRNSPFEAFDSDVEDNFEMNKPKTDTSALEARNGKDIQGIPWERLNFTRDKYRETRLEQYKNYENLSRPREELEKDCKKIEKGSTFYDFQFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSSLLRRGKEVLNVAKPIVSTLCPGSLGQSLSRVQISTMTVKENLMVAGGFQGELICKNLSQPGVAFCAKLTTDDNAITNAVDVYHNPNGSLRVMAANNDAEVRIFDAENFACLNRFTYPWSVNNTSVSPDGKLLAVLGDSAECLLADAQTGKVVATLKGHLDYSFASAWHPDGRTLATGNQDTTCRLWDIRNLSESQAVLKGRMGAIRAVRFSSDGRFMAMAEPADFVHVFDTESGYVKGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRRRCNQYLDSII* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0422 449 Gene3D - 216 446 IPR015943 GO:0005515
Vvi18g0422 449 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 446 - -
Vvi18g0422 449 ProSitePatterns Trp-Asp (WD) repeats signature. 336 350 IPR019775 -
Vvi18g0422 449 FunFam WD-40 repeat family protein 230 446 - -
Vvi18g0422 449 SUPERFAMILY WD40 repeat-like 197 429 IPR036322 GO:0005515
Vvi18g0422 449 MobiDBLite consensus disorder prediction 23 59 - -
Vvi18g0422 449 Pfam WD domain, G-beta repeat 312 349 IPR001680 GO:0005515
Vvi18g0422 449 ProSiteProfiles Trp-Asp (WD) repeats profile. 317 358 IPR001680 GO:0005515
Vvi18g0422 449 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 317 352 - -
Vvi18g0422 449 SMART WD40_4 353 392 IPR001680 GO:0005515
Vvi18g0422 449 SMART WD40_4 269 307 IPR001680 GO:0005515
Vvi18g0422 449 SMART WD40_4 310 349 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0422 Vvi-Chr18 4205773 4212682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0422 271 429 Miscellaneous Gene Families AT5G08390 28.302 9.05e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0422 - - vvi:100267825 907.516