Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0421 ATGAAACTCCACAGCTTGCTTCTCATAAACCTCATCTACGTTACTGTCATCCTGGTAGGAGTTGAGTCCACTCAATCTCCTCCGTTCTCCTGTGATTCCTCTAACCCATCAACCAAATCATACCACTTCTGCAAAACCACATTACCCATACCTGACAGGGTCCGTGACCTGGTGTCTCGTCTCACATTGGACGAGAAAATCTCCCAGCTTGTTAACTCCGCCCCGGCCATTCCACGCTTGGGTATCCCCGCTTACGAATGGTGGTCGGAAGCGTTACACGGAGTGGCCGATGCTGGACCGGGCATCAGGTTCAACGGCACCATTCGTTCCGCCACCAGCTTCCCTCAAGTCATCCTCACTGCTGCCTCCTTCGATGTTCATCTCTGGTACCGCATCGGACGGGCGATCGGAGTGGAAGCTAGAGCTGTGTACAATGCGGGACAAACTAAGGGTATGACATTCTGGGCACCAAATATAAACATATTCAGGGACCCCAGATGGGGAAGAGGTCAAGAGACCCCCGGCGAAGATCCACTGGTCACGGGAAGCTATGCAGTGTCCTACGTCAGAGGGGTTCAAGGGGATTGTCTTCGAGGACTGAAACGGTGTGGTGAGCTTCAGGCTTCGGCTTGTTGCAAACACTTCACCGCCTATGATTTGGACGACTGGAAGGGCATCGATAGATTTAAGTTTGACGCCCGTGTGACAATGCAAGATTTGGCAGATACATACCAACCACCATTCCACAGATGCATAGAGGAAGGGAGGGCGAGTGGGATAATGTGTGCTTACAACCGAGTGAATGGAGTCCCAAGCTGTGCCGATTTCAATCTCTTGACCAATACTGCCAGGAAAAGATGGAACTTCCAAGGGTACATCACGTCCGACTGTGATGCTGTGTCCCTCATTCATGATTCTTATGGATTTGCCAAAACACCCGAGGATGCAGTTGTGGATGTTCTTAAGGCTGGCATGGACGTAAACTGTGGCACCTACTTGCTGAATCATACGAAATCAGCAGTTATGCAGAAAAAACTGCCTGAATCTGAACTAGACAGAGCCCTTGAGAATCTCTTCGCTGTGAGAATGAGGTTAGGTCTTTTCAATGGCAATCCCAAGGGACAACCTTACGGTGACATCGGTCCAAACCAAGTCTGCTCGGTGGAGCATCAGACTCTGGCCCTGGATGCTGCTCGGGACGGCATTGTCCTTCTAAAGAACTCTCAGAGGCTCCTTCCACTTCCCAAAGGAAAAACCATGTCCCTCGCTGTAATAGGCCCGAATGCCAATTCCCCAAAAACGCTAATTGGAAATTATGCAGGGCCTCCCTGTAAATTCATCACACCATTGCAAGCACTGCAGAGCTATGTTAAGAGCACAATGTATCACCCAGGTTGCGATGCGGTTGCATGCTCTTCCCCATCAATAGAAAAGGCAGTGGAGATAGCCCAAAAAGCTGATTATGTGGTTCTGGTTATGGGATTGGATCAAACTCAAGAGAGGGAGGCCCATGATCGTTTGGACTTGGTGCTCCCAGGAAAGCAACAGCAACTCATCATCTGTGTTGCGAACGCTGCAAAGAAGCCAGTTGTGTTGGTGCTTCTTAGCGGAGGCCCTGTGGATATATCTTTTGCCAAATACAGCAACAACATTGGAAGCATCTTGTGGGCTGGTTATCCAGGCGGAGCTGGTGGGGCTGCAATTGCAGAAACCATCTTCGGTGACCATAACCCAGGGGGGAGATTGCCGGTTACTTGGTATCCACAAGATTTTACTAAAATACCAATGACAGACATGAGGATGCGGCCTGAATCAAATTCAGGCTATCCTGGGCGCACTTACAGATTCTACACAGGGGAAAAGGTTTTTGAATTTGGCTATGGCCTCAGCTACTCAACCTATTCTTGTGAGACCATCCCTGTCACCCGCAATAAGCTCTATTTCAATCAGTCCTCAACTGCTCACGTGTATGAGAACACAGATTCCATCCGTTACACCTCAGTTGCAGAGCTGGGGAAAGAGTTATGTGATTCCAACAACATATCGATCTCCATTAGAGTCAGAAATGATGGAGAGATGGCGGGTAAACATTCGGTGTTGCTATTTGTAAGGCGTTTGAAGGCCAGTGCTGGGAGTCCCATAAAACAGCTGGTTGCATTTCAGAGTGTGCATCTGAATGGGGGGGAAAGCGCTGATGTTGGGTTTTTGTTGAACCCTTGTGAGCACTTCAGCGGACCCAACAAAGATGGGCTGATGGTGATAGAAGAAGGGACTCATTTCTTGGTTGTAGGAGATCAGGAACATCCAGTTACCGTTGTAGTATGA 2325 0.4916 MKLHSLLLINLIYVTVILVGVESTQSPPFSCDSSNPSTKSYHFCKTTLPIPDRVRDLVSRLTLDEKISQLVNSAPAIPRLGIPAYEWWSEALHGVADAGPGIRFNGTIRSATSFPQVILTAASFDVHLWYRIGRAIGVEARAVYNAGQTKGMTFWAPNINIFRDPRWGRGQETPGEDPLVTGSYAVSYVRGVQGDCLRGLKRCGELQASACCKHFTAYDLDDWKGIDRFKFDARVTMQDLADTYQPPFHRCIEEGRASGIMCAYNRVNGVPSCADFNLLTNTARKRWNFQGYITSDCDAVSLIHDSYGFAKTPEDAVVDVLKAGMDVNCGTYLLNHTKSAVMQKKLPESELDRALENLFAVRMRLGLFNGNPKGQPYGDIGPNQVCSVEHQTLALDAARDGIVLLKNSQRLLPLPKGKTMSLAVIGPNANSPKTLIGNYAGPPCKFITPLQALQSYVKSTMYHPGCDAVACSSPSIEKAVEIAQKADYVVLVMGLDQTQEREAHDRLDLVLPGKQQQLIICVANAAKKPVVLVLLSGGPVDISFAKYSNNIGSILWAGYPGGAGGAAIAETIFGDHNPGGRLPVTWYPQDFTKIPMTDMRMRPESNSGYPGRTYRFYTGEKVFEFGYGLSYSTYSCETIPVTRNKLYFNQSSTAHVYENTDSIRYTSVAELGKELCDSNNISISIRVRNDGEMAGKHSVLLFVRRLKASAGSPIKQLVAFQSVHLNGGESADVGFLLNPCEHFSGPNKDGLMVIEEGTHFLVVGDQEHPVTVVV* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0421 774 PANTHER SUGAR HYDROLASE-RELATED 24 770 IPR044993 GO:0009044|GO:0045493
Vvi18g0421 774 FunFam probable beta-D-xylosidase 7 53 374 - -
Vvi18g0421 774 SMART Fn3_like_2 697 767 IPR026891 -
Vvi18g0421 774 Pfam Fibronectin type III-like domain 698 766 IPR026891 -
Vvi18g0421 774 SUPERFAMILY (Trans)glycosidases 41 401 IPR017853 -
Vvi18g0421 774 Pfam Glycosyl hydrolase family 3 C-terminal domain 402 631 IPR002772 GO:0004553|GO:0005975
Vvi18g0421 774 FunFam probable beta-D-xylosidase 2 387 632 - -
Vvi18g0421 774 Gene3D - 388 633 IPR036881 GO:0004553|GO:0005975
Vvi18g0421 774 Gene3D Immunoglobulins 661 773 IPR013783 -
Vvi18g0421 774 PRINTS Glycosyl hydrolase family 3 signature 208 224 IPR001764 GO:0004553|GO:0005975
Vvi18g0421 774 PRINTS Glycosyl hydrolase family 3 signature 282 300 IPR001764 GO:0004553|GO:0005975
Vvi18g0421 774 PRINTS Glycosyl hydrolase family 3 signature 114 133 IPR001764 GO:0004553|GO:0005975
Vvi18g0421 774 Pfam Glycosyl hydrolase family 3 N terminal domain 107 358 IPR001764 GO:0004553|GO:0005975
Vvi18g0421 774 Gene3D - 53 375 IPR036962 GO:0004553|GO:0005975
Vvi18g0421 774 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 402 634 IPR036881 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0421 Vvi-Chr18 4185614 4189806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0421 17 774 Glycoside Hydrolase AT1G78060 68.331 0.0 1067
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0421 - - vvi:100262668 1553.88