Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0420 ATGAAACTCCATAGCTTGCTTCTTATAAACCTCGTCATCTGCCTTGGGGTTGGTGTGCTTCTGGTTGGAGTTCATTGTACTGAGTCTTCTTCTCCTCCATTTGCTTGTGACTCCTCAGACCCATTAACAAAATCATATGCTTTCTGCAATACCACGTTGCGCATCAGCCAAAGGGCCAGCGACCTCATCTCTCGTCTCACATTGGATGAGAAAATCTCCCAACTCATTAGCTCCGCTGCTTCCATTCCAAGGCTTGGTATCCCCGCCTACGAGTGGTGGTCGGAAGCGCTACACGGCATCAGAGACCGACACGGCATCCGATTCAATGGCACCATTCGCTCGGCCACCAGTTTCCCTCAAGTCATCCTCACCGCCGCCTCCTTTGATGCTCACCTCTGGTACCGCATTGGACAGGCTATTGGAATTGAAACAAGAGCAATGTACAACGCTGGACAAGCGATGGGTATGACATTTTGGGCACCAAATATCAATATATTTAGGGATCCAAGATGGGGGAGAGGGCAAGAGACGCCCGGAGAAGATCCAGTGGTCGCAGGAAAATATGCAGTGTCCTACGTGAGAGGGCTTCAAGGGGATACTTTTGAAGGAGGAAAGGTCGATGTTCTTCAGGCTTCAGCCTGTTGCAAGCACTTCACTGCCTATGATTTGGATAATTGGACCAGTATTGATAGGTACACGTTTGATGCTCGTGTGACAATGCAAGACTTGGCAGATACATACCAACCCCCGTTCCGGAGTTGCATCGAGGAAGGGCGAGCGAGTGGGTTAATGTGTGCTTACAACCTAGTGAATGGGGTCCCCAACTGTGCTGATTTCAATCTCTTGTCCAAGACTGCCAGAGGACAGTGGGGCTTTGATGGGTACATTGTGTCGGACTGTGATGCCGTCTCCCTGGTTCATGATGTACAAGGATACGCCAAATCACCGGAGGATGCAGTTGCCATTGTTCTTACAGCTGGCATGGATGTAGCCTGTGGTGGCTACTTGCAGAAACATGCAAAATCAGCGGTCAGTCAGAAAAAACTGACTGAATCTGAAATAGACAGGGCCCTCCTCAACCTCTTCACTGTTAGAATGAGATTAGGATTGTTCAATGGCAACCCAAGGAAACTACCTTTTGGTAACATCGGTCCAGACCAAGTCTGTTCTACAGAGCATCAGACGCTGGCCCTTGAAGCTGCTCGGAGTGGCATTGTCCTTCTAAAGAACTCTGACAGGCTCCTCCCGCTTTCAAAAGGAGAAACCTTGTCTCTTGCTGTGATAGGCCCCAATGCCAATGCCACGGACACACTTCTAGGAAACTATGCAGGCCCTCCATGCAAATTCATATCACCATTGCAAGGTCTTCAAAGCTATGTGAACAACACAATGTATCACGCAGGCTGCAATGACGTTGCATGCTCTTCTGCTTCAATAGAAAATGCAGTGGATGTAGCAAAACAAGCTGATTATGTGGTGTTGGTTATGGGATTGGATCAAACTCAGGAAAGGGAGAAGTATGATCGTTTGGACTTGGTGCTCCCTGGAAAGCAAGAGCAACTCATCACCGGTGTTGCAAAAGCTGCAAAGAAACCAGTTGTATTGGTACTTCTTTGTGGAGGTCCAGTTGATATATCTTTTGCCAAAGGCAGTAGCAACATTGGAAGCATCTTGTGGGCTGGTTATCCAGGCGAAGCTGGAGGGGCTGCAATTGCAGAAACTATCTTCGGTGATCATAATCCAGGGGGAAGATTGCCAGTCACTTGGTATCCAAAAGATTTTATTAAAATACCAATGACAGACATGAGGATGAGGCCTGAACCACAATCAGGCTATCCTGGACGCACTCATCGATTCTACACCGGCAAAACGGTGTTTGAATTTGGCAATGGCCTCAGCTACTCACCCTATTCTTATGAGTTCCTTTCTGTCACCCCAAACAAGCTCTACTTAAATCAGCCATCAACCACTCATGTAGTTGAAAACTCTGGTTACGCGTCAGTTTCAGAGTTGGGAACAGAATTCTGTGAGGCGAAAAAGTTTTCAGCTCTAATTGCAGTTAGAAATGGAGGAAAGATGGCAGGTAAGCATCCAGTGTTGCTATTTGTAAAGCAGGCCAAGGCTGGTAATGGGAGTCCAATGAAACAGTTGGTAGGATTCCAGAATGTTTTTTTGGATGCAGGGGAAAGCAGCAACGTTGAATTTATATTGAGCCCTTGTGAACACCTTAGCAGAGCCAACAAGGATGGCTTGATGGTTATGGAACAAGGCATTCATTTGTTGGTCGTAGGAGATAAAGAGTATCCAATTGCAATTGTAGCATGA 2325 0.4714 MKLHSLLLINLVICLGVGVLLVGVHCTESSSPPFACDSSDPLTKSYAFCNTTLRISQRASDLISRLTLDEKISQLISSAASIPRLGIPAYEWWSEALHGIRDRHGIRFNGTIRSATSFPQVILTAASFDAHLWYRIGQAIGIETRAMYNAGQAMGMTFWAPNINIFRDPRWGRGQETPGEDPVVAGKYAVSYVRGLQGDTFEGGKVDVLQASACCKHFTAYDLDNWTSIDRYTFDARVTMQDLADTYQPPFRSCIEEGRASGLMCAYNLVNGVPNCADFNLLSKTARGQWGFDGYIVSDCDAVSLVHDVQGYAKSPEDAVAIVLTAGMDVACGGYLQKHAKSAVSQKKLTESEIDRALLNLFTVRMRLGLFNGNPRKLPFGNIGPDQVCSTEHQTLALEAARSGIVLLKNSDRLLPLSKGETLSLAVIGPNANATDTLLGNYAGPPCKFISPLQGLQSYVNNTMYHAGCNDVACSSASIENAVDVAKQADYVVLVMGLDQTQEREKYDRLDLVLPGKQEQLITGVAKAAKKPVVLVLLCGGPVDISFAKGSSNIGSILWAGYPGEAGGAAIAETIFGDHNPGGRLPVTWYPKDFIKIPMTDMRMRPEPQSGYPGRTHRFYTGKTVFEFGNGLSYSPYSYEFLSVTPNKLYLNQPSTTHVVENSGYASVSELGTEFCEAKKFSALIAVRNGGKMAGKHPVLLFVKQAKAGNGSPMKQLVGFQNVFLDAGESSNVEFILSPCEHLSRANKDGLMVMEQGIHLLVVGDKEYPIAIVA* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0420 774 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 405 637 IPR036881 GO:0004553|GO:0005975
Vvi18g0420 774 Pfam Glycosyl hydrolase family 3 N terminal domain 81 359 IPR001764 GO:0004553|GO:0005975
Vvi18g0420 774 Pfam Fibronectin type III-like domain 699 765 IPR026891 -
Vvi18g0420 774 PANTHER SUGAR HYDROLASE-RELATED 30 770 IPR044993 GO:0009044|GO:0045493
Vvi18g0420 774 PRINTS Glycosyl hydrolase family 3 signature 118 137 IPR001764 GO:0004553|GO:0005975
Vvi18g0420 774 PRINTS Glycosyl hydrolase family 3 signature 285 303 IPR001764 GO:0004553|GO:0005975
Vvi18g0420 774 PRINTS Glycosyl hydrolase family 3 signature 211 227 IPR001764 GO:0004553|GO:0005975
Vvi18g0420 774 Gene3D Immunoglobulins 664 772 IPR013783 -
Vvi18g0420 774 Gene3D - 58 377 IPR036962 GO:0004553|GO:0005975
Vvi18g0420 774 SMART Fn3_like_2 697 767 IPR026891 -
Vvi18g0420 774 FunFam probable beta-D-xylosidase 2 390 635 - -
Vvi18g0420 774 FunFam probable beta-D-xylosidase 7 58 377 - -
Vvi18g0420 774 Gene3D - 391 635 IPR036881 GO:0004553|GO:0005975
Vvi18g0420 774 Pfam Glycosyl hydrolase family 3 C-terminal domain 405 634 IPR002772 GO:0004553|GO:0005975
Vvi18g0420 774 SUPERFAMILY (Trans)glycosidases 46 403 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0420 Vvi-Chr18 4181109 4184907 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0420 24 772 Glycoside Hydrolase AT1G78060 65.915 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0420 - - vvi:100265962 1506.12