Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0416 ATGAGTACTGGTCTAAAGAAATCTCCTTCAAATGGCTATGAGAAACCTTCAACATCTAAAGAACAGCAGGAGAAGATTAATGAGGTGAGAAGATTGATAGGGCCATTGCCAGATAGGTTGTCTATTTACTGTTCTGATGCATCAATAGCCAGATACTTAACGGCACGAAACTGGAATGTCAAGAAGGCAACTAAAATGCTGAAAGAAACTTTGAAATGGAGATCAGAATACAAACCAGAAGAGATTCGCTGGGAAGACATTGCTCAAGAAGCAGAGACTGGAAAAATATACAGGGCAAATTATATTGACAAACATGGGAGAACAGTTCTTGTCATGAAACCAAGCTGCCAGAACTCGAAGTCAACAAAAGGGCAAATTAAATATTTGGTGTATTGCATGGAGAATGCCATTTTAAATCTGCCACCCAACCAAGAGCAGATGGTATGGATGATTGACTTTCAGGGTTTCAATTTGTCAAATATTTCAGTGAAGTTGACTCGGGAAACAGCCCATGTTCTACAAGACCGTTACCCAGAACGGTTGGGTCTAGCAATACTATACAACCCACCCAAGTTCTTTGAACCATTCTGGACGGTGGTAAAACCGTTTCTGGAGCCGAAGACTTGTAAAAAAGTAAAGTTTGTGTACTCTGATGATCTCAATGCCAAGAAGATAATGGAGGACCTATTTGATATGGACAAGCTTGAGTCTGCATTTGGTGGGAATGATACCGTGGGTTTTAATATTAATAAATATTCTGAAAGCATGAGAGAAGACGATAAGAAGATGCCATCTTTTTGGACAAAAGATAGTCATCCTTCAGGAGCCGCCCTGCAACCAGCCCTGGCAAATGACCCCACTTTGACTCCTATCAACCTACAGTCAGATTCTGATGCTTCAGACAAAGAGAGAGCTGAGAATCCCCCCTCTTTGACTCATATTAACTTACAGTCAGATTCTGATGCTTCAGACAAAGAGAGAGCAGAGAATTCCCCCTCTCATGGTGTAAATTCAGGAGAAGGTCCTCTAGACAACAATGTGCTGGTGAGTGATGAAAGCAGAAATGGAGCGGTAGGTATACATTAA 1086 0.4125 MSTGLKKSPSNGYEKPSTSKEQQEKINEVRRLIGPLPDRLSIYCSDASIARYLTARNWNVKKATKMLKETLKWRSEYKPEEIRWEDIAQEAETGKIYRANYIDKHGRTVLVMKPSCQNSKSTKGQIKYLVYCMENAILNLPPNQEQMVWMIDFQGFNLSNISVKLTRETAHVLQDRYPERLGLAILYNPPKFFEPFWTVVKPFLEPKTCKKVKFVYSDDLNAKKIMEDLFDMDKLESAFGGNDTVGFNINKYSESMREDDKKMPSFWTKDSHPSGAALQPALANDPTLTPINLQSDSDASDKERAENPPSLTHINLQSDSDASDKERAENSPSHGVNSGEGPLDNNVLVSDESRNGAVGIH* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0416 361 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Vvi18g0416 361 Pfam CRAL/TRIO domain 93 241 IPR001251 -
Vvi18g0416 361 SUPERFAMILY CRAL/TRIO domain 84 270 IPR036865 -
Vvi18g0416 361 MobiDBLite consensus disorder prediction 1 17 - -
Vvi18g0416 361 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Vvi18g0416 361 SUPERFAMILY CRAL/TRIO N-terminal domain 16 86 IPR036273 -
Vvi18g0416 361 Gene3D - 3 276 IPR036865 -
Vvi18g0416 361 Pfam CRAL/TRIO, N-terminal domain 45 69 IPR011074 -
Vvi18g0416 361 PANTHER GH16843P 6 292 - -
Vvi18g0416 361 MobiDBLite consensus disorder prediction 1 24 - -
Vvi18g0416 361 CDD SEC14 92 242 IPR001251 -
Vvi18g0416 361 MobiDBLite consensus disorder prediction 262 361 - -
Vvi18g0416 361 SMART sec14_4 90 244 IPR001251 -
Vvi18g0416 361 FunFam Phosphatidylinositol transfer protein 3 5 275 - -
Vvi18g0416 361 MobiDBLite consensus disorder prediction 332 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0416 Vvi-Chr18 4149204 4153129 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0416 - - vvi:100250501 738.028