Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0413 ATGACGGGCACCTCAACAACTAAACTACTGAGCATTCTATGCGCAGCCTTTTCTTGTATACTGTCTCTTTCTTATGGGAGAGTAAATCCCAATTTTCAAGTTAAAGCGGTAAATCTTGGAGGTTGGCTGGTTACAGAAGGTTGGATTAAGCCATCTCTCTTTGATGACATTCCCAACAAAGATTTCCTGGATGGAACTGAACTCCAGTTCAAGTCAGTAACAATTGGGAAGTATCTCTGCGCAGAGACGGGAGGTGGAACAATCATAGTTGTGAATCGAACAGCGGCCTCGGGCTGGGAAACATTTAGATTGTGGAGGATCAATGAAACCGCTTTCCATTTTAGAGTCTTCAACAAACAGTTCATGGGACTAGACACTGCCGGCAATGGGATCGATATAGTAGCAGTTTCAAACACCCCTGGTGGATCCGAAACATTCCAGATCGTGAAGAACCCAAATGATTCGAAGCGGGTGCGAATCAAAGCACCTAATGGGTTCTTCTTACAGGCGAAGACAGAGGAGCTGGTGACAGCTGATTATGCAGGAGACGGTGGATGGGGTGATGATGATCCCACGGTGTTTGTGATGACCGTCAATGTAGCCTTGGAAGGCGAGTTTCAAGTCACTAACGGCTATGGCCCAGACAAAGCTCCTCAAGTCATGAAGGAGCACTGGAGCACATTCATTGTGGAAGATGACTTCAAGTTCATATCAGAAAATGGATTGAATGCAGTGAGGATTCCTGTTGGATGGTGGATAGCATGTGATCCAACACCTCCATCTCCTTTTGTTGGAGGGTCTTTGTACGCCCTTGACAATGCCTTCACTTGGGCTCGGAAATATAAGGTGAATGTTATAATTGATCTACATGCAGCACCGGGTTCTCAGAACGGTTGGGAACATAGTGCTTCCAGAGACGGGTCTCAGGAATGGGGGAAGACTGACCAGAACATACAAAAGACCGTGGCCGTTATAGAATTCTTAACTGCCAGGTACGCCAACAACCCCAGCCTTTATGCAGTTGAGCTGATAAATGAGCCTCTATCACCGGGAGCAACTCTAGAAATGGTTACCAAGTACTACAGGGCCGGTTATGAAGCTGTGCGGAAGCATTCTTTGACAGCTTATGTGGTCATGTCAAACCGATTAGGACCAGCTGATTCGAGGGAGCTCTTTCCTCTCACCAGTGGCTTAAGTAGAGCAGTCATTGACGTCCATTACTACAACCTCTTCGAAGATATGTTTGACCACATGACTGTCCAACAGAATATTGATTTCGTCAACACCAACAGATCAGCACAATTGGGGCGTGTAACCACTTCCAATGGGCCTCTCACTTTTGTTGGGGAATGGGTGGTAGAATGGAAAGTTGAGGGAGCTACAAAGAAGGACTACCAGAGATTCGCAAAGGCTCAATTGAAGGTGTTTGGGCGGGCAACTTTTGGGTGGGCTTACTGGACTCTGAAGAACGTGAAGAACCATTGGAGCCTAGAGTGGATGATCAACAATGGTTACATCAAGCTTTAG 1527 0.465 MTGTSTTKLLSILCAAFSCILSLSYGRVNPNFQVKAVNLGGWLVTEGWIKPSLFDDIPNKDFLDGTELQFKSVTIGKYLCAETGGGTIIVVNRTAASGWETFRLWRINETAFHFRVFNKQFMGLDTAGNGIDIVAVSNTPGGSETFQIVKNPNDSKRVRIKAPNGFFLQAKTEELVTADYAGDGGWGDDDPTVFVMTVNVALEGEFQVTNGYGPDKAPQVMKEHWSTFIVEDDFKFISENGLNAVRIPVGWWIACDPTPPSPFVGGSLYALDNAFTWARKYKVNVIIDLHAAPGSQNGWEHSASRDGSQEWGKTDQNIQKTVAVIEFLTARYANNPSLYAVELINEPLSPGATLEMVTKYYRAGYEAVRKHSLTAYVVMSNRLGPADSRELFPLTSGLSRAVIDVHYYNLFEDMFDHMTVQQNIDFVNTNRSAQLGRVTTSNGPLTFVGEWVVEWKVEGATKKDYQRFAKAQLKVFGRATFGWAYWTLKNVKNHWSLEWMINNGYIKL* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0413 508 Gene3D Glycosidases 191 508 - -
Vvi18g0413 508 SUPERFAMILY (Trans)glycosidases 33 506 IPR017853 -
Vvi18g0413 508 Gene3D - 43 186 - -
Vvi18g0413 508 SUPERFAMILY Actin-crosslinking proteins 69 185 IPR008999 -
Vvi18g0413 508 PANTHER FASCIN 31 508 IPR010431 GO:0007015|GO:0051015
Vvi18g0413 508 FunFam Glucan 1,3-beta-glucosidase A 45 187 - -
Vvi18g0413 508 FunFam Glucan 1,3-beta-glucosidase A 190 508 - -
Vvi18g0413 508 Pfam Cellulase (glycosyl hydrolase family 5) 221 490 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0413 Vvi-Chr18 4130710 4134258 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0413 - - vvi:100257534 1034.63