Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0410 ATGGGGCATCTTCCAGCAATCCGGCATCTCATCAGTCATCTCCACATGTCTCCAAGGCTCTCCTCATCATCACCAACCACAAGATCCTCTTTACAACCGCTCTTTTCCATCCCTACTTTTCAAAAACTATATTCCTTCTTCCCTCCCTCTCTTAAACCCTACCACACTCACTCCAAAACCCTAGTACCCCATCTCCACCTCACCCCCAATGATACTACGCTGGTTCTGAAGAAAGATGAGCGGTTGGGGTCGCGTTCCGTTAATCAGGAGCATATTGAGGGCACTAGCACGACCACAATTGCAGCCATTGTGACTTCATTGGGGGGTCCTCCTAGTGCCGTGGGAATTGTCCGGTTATCGGGACCAGAAGCAGTGGCCATCGTTGCCCGTGTATTCCGTCCCGCTCGGAGGAACAAAGGCAAGACTTTGGGTTCGGGTTCGGGTTCGTGGCGGCCCACCAGTCATGTGGTGGAGTACGGTGTCGTTTTGGACCACCACGGGAATGTGGTGGACGAGGTTCTAGCCATACCAATGTTGGCCCCAAGATCCTACACTCGTGAAGATGTGGTTGAGCTTCAGTGTCATGGCAGTGAAGTGTGTTTACGCCGTGTGTTGAGAGCTTGCTTGGAATCTGGGGCAAGGCTTGCAGAACCAGGCGAGTTCACCCTTCGTGCTTTTCTTAATGGTCGATTAGATCTCTCCCAAGCTGAAAATGTGGGAAAACTAATTTCAGCCAAGTCCATTGCTGCTGCAGATGCAGCACTTGCAGGAATTCAGGGAGGTTTCTCATCTTTGGTTAGATCACTTAGAATACAGTGCATCGAGTTGCTTACTGAAATTGAAGCTCGATTAGATTTTGATGACGAGATGCCACCATTGGACTTGAATCTCATTATGGATAAAATACATTCCATGTCACAAGATGTGGAGAATGCATTGGAGACTGCCAATTATGACCAGCTACTGCAATCTGGACTACAGATAGCAATTATTGGTCGTCCAAATGTTGGGAAGTCCAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGAGCAATAGTTACAGAGATAGCTGGAACCACACGGGATGTGGTGGAAGCCAGTGTTTCCATTCATGGCATCCCTGTCACCCTCCTTGATACAGCAGGTATTAGGGAAACAGATGACATTGTGGAGAAGATTGGTGTAGAGAGATCCGAAGCAGTTGCTATCAGTGCAGATGTCATTATCATGACGATAAGTGCATTAGACGGGTGGACATCACAAGATACCAAACTTTTTAACAGGATTATATCCAATAAGAAATTCGTTGAATCTTCTACTCCAGTGATCCTTGTAGTCAACAAAATAGATTGTGCTCCATCTGCATGCACCGAATTGTTTATGGAGGGAAACTCTTTCAGTAAGCACATTTTCACTTGTGCAGTCACCGGCCAAGGAATATCAGACTTGGAGTCAGCAATAATAGAGATTGTTGGTCTCAACAAGATTCCTGCAGGGGGGCGCAGATGGACTGTAAACCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCTCTTGCAAGGTTGATATCCTCTATAGAGGAGGAAATGCCTCTTGACTTCTGGACAATTGATTTGAGGGAAGCCGCATTGGCCCTTGGCCAGATAAGTGGAGAAGATATCTCTGAAGAAGTTTTGACCAACATCTTTGGCAAGTTCTGTATTGGTAAGTAG 1716 0.4679 MGHLPAIRHLISHLHMSPRLSSSSPTTRSSLQPLFSIPTFQKLYSFFPPSLKPYHTHSKTLVPHLHLTPNDTTLVLKKDERLGSRSVNQEHIEGTSTTTIAAIVTSLGGPPSAVGIVRLSGPEAVAIVARVFRPARRNKGKTLGSGSGSWRPTSHVVEYGVVLDHHGNVVDEVLAIPMLAPRSYTREDVVELQCHGSEVCLRRVLRACLESGARLAEPGEFTLRAFLNGRLDLSQAENVGKLISAKSIAAADAALAGIQGGFSSLVRSLRIQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHSMSQDVENALETANYDQLLQSGLQIAIIGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVVEASVSIHGIPVTLLDTAGIRETDDIVEKIGVERSEAVAISADVIIMTISALDGWTSQDTKLFNRIISNKKFVESSTPVILVVNKIDCAPSACTELFMEGNSFSKHIFTCAVTGQGISDLESAIIEIVGLNKIPAGGRRWTVNQRQCEQLVRTKEALARLISSIEEEMPLDFWTIDLREAALALGQISGEDISEEVLTNIFGKFCIGK* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0410 571 Pfam GTP-binding protein TrmE N-terminus 99 230 IPR018948 -
Vvi18g0410 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 489 IPR027417 -
Vvi18g0410 571 CDD trmE 323 492 IPR031168 -
Vvi18g0410 571 NCBIfam small GTP-binding protein domain 326 482 IPR005225 GO:0005525
Vvi18g0410 571 CDD TrmE_N 99 229 IPR018948 -
Vvi18g0410 571 Pfam MnmE helical domain 233 568 IPR025867 -
Vvi18g0410 571 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 325 492 IPR031168 -
Vvi18g0410 571 Coils Coil 510 530 - -
Vvi18g0410 571 FunFam tRNA modification GTPase MnmE 326 499 - -
Vvi18g0410 571 Hamap tRNA modification GTPase MnmE [mnmE]. 98 571 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vvi18g0410 571 Gene3D tRNA modification GTPase MnmE domain 2 231 571 IPR027368 -
Vvi18g0410 571 PANTHER TRNA MODIFICATION GTPASE GTPBP3 85 571 - -
Vvi18g0410 571 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 112 571 IPR004520 GO:0003924|GO:0005525|GO:0006400
Vvi18g0410 571 Gene3D - 326 499 IPR027417 -
Vvi18g0410 571 Gene3D Probable tRNA modification gtpase trme; domain 1 84 230 IPR027266 GO:0005515
Vvi18g0410 571 FunFam tRNA modification GTPase MnmE 94 230 - -
Vvi18g0410 571 Pfam 50S ribosome-binding GTPase 327 448 IPR006073 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0410 Vvi-Chr18 4087223 4096193 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0410 K03650 - vvi:100242149 1062.75