Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0402 ATGGCCAGTTTGCTTCAGGGTTCGTGCTCTTCCACTAGGCCGGCAATTCACAGTTTGGGGGTCTCTTCAGATGGCGACACTTCCAGATCAATTTCTTTCTCTTCTCAACTCAACAATCTCTGCTTCAAATCATTGGAGAAAAGGTTTCATGTGAAGCGCCTTAGAATGGGTACCCTTGTAAGGGCAGAGAGCATATCCAAGCAAGTGGAGGTTGACATCTCATTGAGTCCAAGAGTAAATTCTGTAAAGCCTTCAAAAACAATTGCTGTAACTGATTTGGCAACTGCACTTGTGCAAGCTGGAGTTCCAGTTATACGGTTAGCAGCAGGAGAACCTGATTTTGATACCCCTACTGTTGTTGCTGAGGCTGGGATAAATGCAATTCGTGAAGGTTATACAAGGTACACACCCAATGCAGGCACTCTGGAGCTCCGCACTGCAATTTGTCATAAACTAAAGGAGGAGAATGGACTAACTTATACCCCTGATCAAATATTGGTCAGCAATGGAGCCAAGCAGTCTGTACTTCAAGCTGTGCTTGCAGTTTGTTCACCGGGTGATGAGGTTATTATTCCTGGTCCATTTTACGTAAGCTACCCTGAAATGGCAAGGTTAGCTGATGCTACGCCTGTAATTCTTCCTACACTCATCTCCAACAATTTTCGCTTGGATCCAGAGGTTCTTAAGTCCACAATCAGTGAAAAGTCAAGGGTGCTGATTCTTTGTTCACCATCAAATCCAACAGGATCTGTATATCCCAAGAAACTCCTAGAGGAGATTGCTGATATCGTAGCAAAACATCCTAGACTTCTGGTAATAGCTGATGAGATTTATGAGCATATTATTTATGCACCAGCCATTCACACAAGCTTTGCGTCTTTACCAGGCATGTGGGAGAGAACACTTACCGTCAATGGATTTTCAAAGACTTTTGCAATGACTGGTTGGCGACTTGGATACCTAGCTGGTCCAAAACACTTTGTGGCAGCATGTGGAAAAATTCAGAGCCAGGTCACCTCAGGTGCTAGCAGCATTTCACAGAAAGCAGGGGTTGCGGCTTTGGGATTGGGGTACCGTGGAGGGGAAGCAGTTGCCAAAATGGTAAAAGCATTTGAAGAGCGACGGGATTTCTTGGTTGAAAGCTTTAGAGAGTTGGGGGGTGTTAAGATATCAGAGCCTCAGGGTGCATTCTATCTATTCCTTGATTTTAGCTCCTATTATGGAGCAGAAGCAGAAGGTTATGGTATCATCAAGGACTCAGAATCTCTATGCAAATATCTGCTTGATAAGGCACAGGTAAGGTTTTCGGATTTTAGTGATGACTTTTCATAA 1332 0.4407 MASLLQGSCSSTRPAIHSLGVSSDGDTSRSISFSSQLNNLCFKSLEKRFHVKRLRMGTLVRAESISKQVEVDISLSPRVNSVKPSKTIAVTDLATALVQAGVPVIRLAAGEPDFDTPTVVAEAGINAIREGYTRYTPNAGTLELRTAICHKLKEENGLTYTPDQILVSNGAKQSVLQAVLAVCSPGDEVIIPGPFYVSYPEMARLADATPVILPTLISNNFRLDPEVLKSTISEKSRVLILCSPSNPTGSVYPKKLLEEIADIVAKHPRLLVIADEIYEHIIYAPAIHTSFASLPGMWERTLTVNGFSKTFAMTGWRLGYLAGPKHFVAACGKIQSQVTSGASSISQKAGVAALGLGYRGGEAVAKMVKAFEERRDFLVESFRELGGVKISEPQGAFYLFLDFSSYYGAEAEGYGIIKDSESLCKYLLDKAQVRFSDFSDDFS* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0402 443 SUPERFAMILY PLP-dependent transferases 75 438 IPR015424 -
Vvi18g0402 443 Gene3D Aspartate Aminotransferase, domain 1 88 438 IPR015422 GO:0003824
Vvi18g0402 443 PANTHER ASPARTATE AMINOTRANSFERASE 73 434 - -
Vvi18g0402 443 CDD AAT_like 105 433 - -
Vvi18g0402 443 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 306 319 IPR004838 GO:0003824|GO:0009058|GO:0030170
Vvi18g0402 443 Pfam Aminotransferase class I and II 103 433 IPR004839 GO:0009058|GO:0030170
Vvi18g0402 443 Gene3D - 134 356 IPR015421 GO:0003824
Vvi18g0402 443 FunFam Aspartate aminotransferase 134 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0402 Vvi-Chr18 4035374 4039840 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0402 K15849 - vvi:104882479 847.425