Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0399 ATGGGAGTTGTAGCTACTTTGGAATACTTTTCTGACCTACTCAGCAGCAAAAAAGGGAAGAAAAGGAAGCAACTGCAGACGGTAGATCTCAAAGTCAGGATGGACTGTGAGGGCTGCCAGCTAAAAGTGAAGAAAGCTCTTTCTTCGCTGAAAGGAGTAAAATCTGTGGATGTAAACCTGAAACAACAGAAGGCGAGTGTTACTGGTTATGCAGATGCGAAGAAAGTGCTGAAGAAGGCACAGTCAACAGGGAAAAAGGCTGAGCTTTGGCCTTATGTTCCATACAATCTGGTGGCTCATCCCTACGTTGCTCAAGTTTATGACAAGAAGGCACCTCCTGGTTATGTCCGGAGCTCGGAGAACCCTGCCATCACTGCTATGAGTCCATTGGAGGAACAGTACACCACCATGTTCAGCGATGATAATCCAAATGCTTGCTCCATCATGTAA 450 0.46 MGVVATLEYFSDLLSSKKGKKRKQLQTVDLKVRMDCEGCQLKVKKALSSLKGVKSVDVNLKQQKASVTGYADAKKVLKKAQSTGKKAELWPYVPYNLVAHPYVAQVYDKKAPPGYVRSSENPAITAMSPLEEQYTTMFSDDNPNACSIM* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0399 149 Gene3D - 13 91 - -
Vvi18g0399 149 ProSiteProfiles Heavy-metal-associated domain profile. 25 88 IPR006121 GO:0046872
Vvi18g0399 149 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 27 147 IPR045181 GO:0046872
Vvi18g0399 149 Pfam Heavy-metal-associated domain 31 86 IPR006121 GO:0046872
Vvi18g0399 149 SUPERFAMILY HMA, heavy metal-associated domain 26 91 IPR036163 GO:0046872
Vvi18g0399 149 CDD HMA 34 88 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0399 Vvi-Chr18 4003675 4004243 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0399 - - vvi:100259038 298.901