Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0398 ATGGCGATTCGATCCTTGATTCCTCTCTTAATGGCGTACCTCCTCGTCGTCGATGCTGCCATTGCTGTCACATTTTCGTCAAAGCTCATTCATCGCTTCTCCGACGAGGCCAAGGCGTTTTTCGTTTCCAGGAACGGCAATATCTTTGCTGATTCGTGGCCGAAGAAGAGGAGCTTTGATTACTACAGGTTGCTTCTGAGTAGCGACTTGAAGCGCCAGAAGTTGAAGCTGGGAGCGGAATATCAGCTCTTGTTTCCATCTGAAGGAAGCGACGCTCTGTTCTTGGGTAATGAATTTGGCTGGTTACATTACACTTGGATTGATATAGGAACACCGAATGTCTCTTTTCTTGTTGCATTGGATGCTGGGAGCGATTTGCTTTGGGTTCCTTGTGATTGTATGCAATGTGCTCCCTTGTCTGCCAGCTACTATGATAGATTGGGTAGAGATCTGAATGAGTATAGCCCATCTTTATCAAGCACCAGCAAGCCCCTATCTTGCAATGATCAATTATGTGAACTGGGTTCAGACTGCAAAAGTTCAAAGGACCCTTGCCCTTACCTTGCTAGCTACTATTCAGAGAATACCTCAAGTTCTGGTTTGCTGATCGAGGACCGACTACATTTGGCACCATTCAGTGAACATGCATCCCGAAGTTCGGTGTGGGCTTCAGTCATTATAGGCTGTGGTAGGAAACAAAGTGGTGCTTTTTCAGATGGAGCGGCTCCTGATGGTCTTATGGGATTGGGACCTGGGGACCTTTCAGTTCCTAGTTTGCTAGCAAAAGCAGGATTGGTTCGAAATACTTTCTCAATTTGTTTTGACGATAATCATTCTGGGACAATTTTGTTTGGTGACCAAGGACTTGTGACCCAAAAATCTACATCATTTGTGCCTTTAGAAGGAAAATTTGTTACCTATCTTATTGAGGTGGAGGGTTACCTCGTTGGGAGTTCTTCTCTTAAGACAGCAGGATTTCAAGCTCTGGTTGACAGTGGAACATCATTCACATTTCTTCCATATGAAATTTATGAAAAAATTGTTGTGGAGTTTGACAAACAAGTGAATGCTACAAGGTCCAGCTTCAAAGGGTCCCCCTGGAAGTACTGTTATAATTCTAGTTCACAGGAATTGCTCAACATTCCTACTGTGACACTTGTGTTTGCTATGAACCAAAGTTTTATAGTACATAATCCTGTTATTAAGTTAATCTCGGAGAATGAGGAATTCAATGTTTTCTGTTTACCTATCCAGCCTATACATGAAGAATTTGGCATCATTGGCCAAAACTTCATGTGGGGTTATCGCATGGTGTTCGATAGGGAAAATTTGAAGCTGGGTTGGTCTACTTCCAATTGTCAAGATATAACCGATGGTAAAATAATGCATTTAACACCACCTCCAAATGATAGATCTCCAAACCCACTGCCAACCAATCAGCAACAGATGACCCCTAGTAGGCATGCTGTTGCTCCTGCTGTTGCTGGAAGGACTCCCGCAAAATCTGCTGCAGTGTCACCTCTTGCTTTTCCCTACTGGCTCTGTTTGATGAATTTGCTGCTAGTGTTGATGCGTTTGTTTGTTCTAGATGTCTAA 1596 0.4336 MAIRSLIPLLMAYLLVVDAAIAVTFSSKLIHRFSDEAKAFFVSRNGNIFADSWPKKRSFDYYRLLLSSDLKRQKLKLGAEYQLLFPSEGSDALFLGNEFGWLHYTWIDIGTPNVSFLVALDAGSDLLWVPCDCMQCAPLSASYYDRLGRDLNEYSPSLSSTSKPLSCNDQLCELGSDCKSSKDPCPYLASYYSENTSSSGLLIEDRLHLAPFSEHASRSSVWASVIIGCGRKQSGAFSDGAAPDGLMGLGPGDLSVPSLLAKAGLVRNTFSICFDDNHSGTILFGDQGLVTQKSTSFVPLEGKFVTYLIEVEGYLVGSSSLKTAGFQALVDSGTSFTFLPYEIYEKIVVEFDKQVNATRSSFKGSPWKYCYNSSSQELLNIPTVTLVFAMNQSFIVHNPVIKLISENEEFNVFCLPIQPIHEEFGIIGQNFMWGYRMVFDRENLKLGWSTSNCQDITDGKIMHLTPPPNDRSPNPLPTNQQQMTPSRHAVAPAVAGRTPAKSAAVSPLAFPYWLCLMNLLLVLMRLFVLDV* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0398 531 PANTHER ASPARTYL PROTEASES 13 447 IPR001461 GO:0004190|GO:0006508
Vvi18g0398 531 FunFam Aspartyl protease family protein 1 289 455 - -
Vvi18g0398 531 PRINTS Pepsin (A1) aspartic protease family signature 109 129 IPR001461 GO:0004190|GO:0006508
Vvi18g0398 531 PRINTS Pepsin (A1) aspartic protease family signature 425 440 IPR001461 GO:0004190|GO:0006508
Vvi18g0398 531 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Vvi18g0398 531 Gene3D Acid Proteases 287 458 IPR021109 -
Vvi18g0398 531 CDD pepsin_like 107 448 IPR034164 -
Vvi18g0398 531 ProSiteProfiles Peptidase family A1 domain profile. 103 449 IPR033121 -
Vvi18g0398 531 MobiDBLite consensus disorder prediction 465 492 - -
Vvi18g0398 531 Gene3D Acid Proteases 96 286 IPR021109 -
Vvi18g0398 531 FunFam Aspartyl protease family protein 1 90 286 - -
Vvi18g0398 531 Pfam Xylanase inhibitor C-terminal 323 449 IPR032799 -
Vvi18g0398 531 SUPERFAMILY Acid proteases 99 457 IPR021109 -
Vvi18g0398 531 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 328 339 IPR001969 GO:0004190|GO:0006508
Vvi18g0398 531 Pfam Xylanase inhibitor N-terminal 104 286 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0398 Vvi-Chr18 3994242 4000373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0398 96 456 Miscellaneous Gene Families AT1G44130 25.722 6.74e-22 96.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0398 - - vvi:100253991 1023.08