Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0397 ATGTCTTCGCCATATCCAATTCTTGACAATCGACCAATTGATCAATGGAAAGTGACAGAGTTGAAGGAAGAGCTCAAGAGGCGGAAATTAAAGATGACTGGGTTGAAAGATGATTTGATAAAGCGGTTGAATGAAGCAATTCTCATTGAGAGGGAGGCTTTGGAGAGAGAAGCAAACAAAGCTGTTGTTTGTGAGCCTGAACCTGTGGTTAAGGGTGGGGATATGGGGGCAAAGCCTAATAATCATGTTGAAATGACTGGAGATACTGGGAATCCTGGTAGAAACAAAAGTGAAAAGTTGGATGATTTTGTTCGTGTGGTTGAGATTGTTGATGGTCCAACTGAGCTGGGTACTGGGTCTGCCACCACGATTGGGGAACTGGTGGTTTCAGAGGCTTCCATGGAAACTAGTGGAATGGTTGACAAGGCTGTGATAGTCCAGATTGCATCTAAAGTGAAATCTTCTGAAAACGAGGAAGTGAAATCTGCTGAAAACGATGAAGTGAAATCTGCTGAAAACGATGAAGTGAAATCGGCAGAAAATGATGAAATCAAGACAGAGAGTGAGAATTCAAAGCCTCCCCAAATAGATGCGGTGCCTAATGTTTCCGGTCCAAACAACCAGGTATATGAGGTCAGCCCTGTTTTAGGGTTTCAAGTAGAGTCTGAATCTATTTCTAGTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGGATAATTTAAATGCTGATAATGTCAATTTAGAATTAGAAGTTGTTAAGACGGAGATGGTGCAACCATCATCTCAAGAAGTCCCTCCCAGTGGTGGCAATTTACACCCACTGGATGATCAAAAGCCACGTGAGAACCAGGACTCTGTAGAGGAAACAGATGACAACAAATCCAAGCATGTGGATTTTTGTGGAAAAAACGATGATGCAGGTGGGGGTTCACCTGTAAAATTGAACTTAGACCAACATACAGCTAATAATTTAGTGGATGATGGTGTATTGGAGAATAAGCAAATTGATTCAAATCACATATCCAATGAAGTGGAAGACAAGATTGAGCTTACTGAAATGTCTTTTACAAAAGACAAAAATCCTGTTCATGACGTTGTGCTTGATTTGTATCCCGAAGAGATGGAAACATCTGCAGAAAAGAAGAATAGCATCACCGCTCCTTCTGAGGAAAGTAACTTACAAGATGATTCTATGGAGGAGGATGCATTGGAGACAAAGCAGACTGACTCAAATCATAATTCTAGTGAAGTGGGGAATAAGATTGAGATGACTGAAGTTACTGGTTCCAAGGTGGGAGGTAAAGTTGATGACGTGGGGACTGATTTATCTTCTGACAGGACGGTGCCTCCTTCTGAAAAGAAAGATAATGTTGCCACTCTGGAGAAAAGGAAGTTTCAAGATGAAGGAGTTGGGGTCAATGAAACTCCGAAGAGGCAGCGTAGGTGGAATAATGAAAGCCTCAAAATTCCTGAGCCACAAAGCTCTAATCTTACACCGTCTACAACACCTAAGGATTCATTTCATGCTTCAAGACTGAAGCGCAACCTCACAAGGTCTGACTCTACAGTTAGTGGAGATGCACCAAAGGAACGAATTGTACCGATGTCACCAAAACCTCCAACAAATTCTCTTAGAATTGATCGCTTTTTGCGTCCTTTTACCCTGAAAGCTGTGCAAGAACTTCTAGCTAAAACTGGGAATGTCTGCAGTTTCTGGATGGACCATATTAAAACCCATTGCTATGTCACATACTCATCAGTAGAAGAAGCTAAAGAAACGCGAAATGCTCTCTACAATCTTCAATGGCCTCCAAATGGAGGGCGCCTCCTAGTGGCTGAGTATGTTGATCCCCAAGAAGTGAAGTCACGGGTAGATGCCCCACCCCAATCTCCAGCCACACCAGTTAGTGCTGGTCCATCTGTTCCTGCGGCATCATCTCCCGTTCAGACACCACCCTCAGCGCGTCAGCATGGCCTCAGGCAACAACTTCCACCCCCACCTCCCGTACTTCAGCCGCCACCTGTTTCTAAGCCACCTACAGCAAGGGAACGTATTCAACTTCCTCCACCGCCTCCAGTCCCTGAGAAAGTAGATGCACCAATTGTTACCTTGGACGACCTATTCAGGAAAACGAAGACCACCCCTCGGATCTACTACCTCCCCTTGTCAGACGAGCAGGTTGCCGCAAAAACGAAGAAGAAGTAG 2211 0.4387 MSSPYPILDNRPIDQWKVTELKEELKRRKLKMTGLKDDLIKRLNEAILIEREALEREANKAVVCEPEPVVKGGDMGAKPNNHVEMTGDTGNPGRNKSEKLDDFVRVVEIVDGPTELGTGSATTIGELVVSEASMETSGMVDKAVIVQIASKVKSSENEEVKSAENDEVKSAENDEVKSAENDEIKTESENSKPPQIDAVPNVSGPNNQVYEVSPVLGFQVESESISSDSVSINEKNELKDNLNADNVNLELEVVKTEMVQPSSQEVPPSGGNLHPLDDQKPRENQDSVEETDDNKSKHVDFCGKNDDAGGGSPVKLNLDQHTANNLVDDGVLENKQIDSNHISNEVEDKIELTEMSFTKDKNPVHDVVLDLYPEEMETSAEKKNSITAPSEESNLQDDSMEEDALETKQTDSNHNSSEVGNKIEMTEVTGSKVGGKVDDVGTDLSSDRTVPPSEKKDNVATLEKRKFQDEGVGVNETPKRQRRWNNESLKIPEPQSSNLTPSTTPKDSFHASRLKRNLTRSDSTVSGDAPKERIVPMSPKPPTNSLRIDRFLRPFTLKAVQELLAKTGNVCSFWMDHIKTHCYVTYSSVEEAKETRNALYNLQWPPNGGRLLVAEYVDPQEVKSRVDAPPQSPATPVSAGPSVPAASSPVQTPPSARQHGLRQQLPPPPPVLQPPPVSKPPTARERIQLPPPPPVPEKVDAPIVTLDDLFRKTKTTPRIYYLPLSDEQVAAKTKKK* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0397 736 MobiDBLite consensus disorder prediction 154 190 - -
Vvi18g0397 736 SMART sap_9 13 47 IPR003034 -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 663 699 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 276 304 - -
Vvi18g0397 736 Coils Coil 40 60 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 641 659 - -
Vvi18g0397 736 Pfam RNSP1-SAP18 binding (RSB) motif 697 735 IPR032552 -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 488 508 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 71 97 - -
Vvi18g0397 736 Gene3D SAP domain 3 58 IPR036361 -
Vvi18g0397 736 Coils Coil 232 252 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 622 700 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 378 542 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 258 313 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 191 207 - -
Vvi18g0397 736 Coils Coil 18 38 - -
Vvi18g0397 736 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 396 735 - -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 449 487 - -
Vvi18g0397 736 CDD RRM_ACINU 543 627 IPR034257 -
Vvi18g0397 736 ProSiteProfiles SAP motif profile. 13 47 IPR003034 -
Vvi18g0397 736 SUPERFAMILY SAP domain 12 47 IPR036361 -
Vvi18g0397 736 MobiDBLite consensus disorder prediction 153 207 - -
Vvi18g0397 736 SUPERFAMILY RNA-binding domain, RBD 537 627 IPR035979 GO:0003676
Vvi18g0397 736 MobiDBLite consensus disorder prediction 410 424 - -
Vvi18g0397 736 Pfam SAP domain 14 47 IPR003034 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0397 Vvi-Chr18 3980856 3987316 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0397 K12875 - vvi:100248897 1360.13