Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0394 ATGGGGTCTTTCTTGAGCTTGGCTGGGCCCAAGAGTAGGACAAGCGAGCATGATGAGGGGTCTCAGCATGAAACCTGCAAGAGGCAAAGGATGTCTTCAAGCTTTAATGAGGAAAATCCAAGATTGATTCCTAGCCTTCCTGATGAGATATCAATCCTTATTCTTGCTAGACTTCCAAGAATTTGCTATTTCGATTTGAGGTTGGTGTCACGGAACTGGAAGGCAACCATTACAAGTCCAGAACTCTTCAATTTAAGAAAAGAACTTGGAAAAACAGAAGAATGGCTATACATATTGACTAAGGTTGAAGAAGATAGACTTTTGTGGCATGCTTTGGACCCTTTGTCAAGAAGATGGCAGAGGTTGCCATCAATGCCTAATGTTGTTTATGAAGAAGAATCTAGGAAGGTTTCATCTGGGCTTTGGATGTGGAATATGGTGGGGCCAAGCATCAAAATTGCGGATGTAATTAGGGGCTGGCTTGGGCGGAAGGATACATTGGATCAAATGCCATTTTGTGGTTGTGCTATTGGAGCTGTTGATGGATGCCTCTATGTTCTTGGTGGATTTTCCAGTGCTTCAACAATGAGATGCGTCTGGCGTTTTGATCCAATTTTGAATGCATGGAGTGAAGTGACTCCAATGTCAACAGGCAGGGCCTACTGTAAGACTGGTATATTAAACGACAAGCTTTATGTTGTTGGAGGGGTTAGTCGGGGCAGAGGTGGATTGACTCCTCTTCAATCTGCGGAAGTTTTTGATCCTTGCACTGATACATGGTCTCAAATACCAAGCATGCCATTCTCAAGAGCTCAGGTGTTACCCACTGCCTTTTTGGCAGACATGCTAAAGCCTATTGCCACCGGAATGACTTCATACATGGGAAGATTATGTGTCCCTCAGAGTTTATACTCATGGCCTTTTTTTGTAGATGTTGGAGGAGAGATTTATGATCCTGAAACAAATTCATGGGTTGAAATGCCAATTGGTATGGGGGATGGTTGGCCTGCACGGCAGGCTGGTACAAAATTAAGCGTTGTAGTAGATGGTGAATTATATGCATTTGACCCTTCCAGTTCCCTAGATAGTGGCAATATCAAGGTTTATGATCAAAAAGAAGATGCTTGGAAAGTTGTTATAGGAAAGGTTCCTATCTGTGATTTTACAGATTCAGAATCTCCATACTTACTTGCTGGGTTTCATGGCAAACTTCACATCATCACAAAAGATGCCAATCATGACATTGCTGTTCTGCAGGCTGATCTGCGTGATAATTTGGGTTTTCCCCCATCAACCTCACCTTCTTGTTCAGCTGCCTCCTCACATGAACATTCTGATTTATTGGCAGAAACAGAAACAGTTGTTTGGAAGGTTATTGCCACAAGGGATTTTGGAACTGCAGAACTGGTCAGTTGTCAAGTTCTTGATATTTAG 1434 0.4275 MGSFLSLAGPKSRTSEHDEGSQHETCKRQRMSSSFNEENPRLIPSLPDEISILILARLPRICYFDLRLVSRNWKATITSPELFNLRKELGKTEEWLYILTKVEEDRLLWHALDPLSRRWQRLPSMPNVVYEEESRKVSSGLWMWNMVGPSIKIADVIRGWLGRKDTLDQMPFCGCAIGAVDGCLYVLGGFSSASTMRCVWRFDPILNAWSEVTPMSTGRAYCKTGILNDKLYVVGGVSRGRGGLTPLQSAEVFDPCTDTWSQIPSMPFSRAQVLPTAFLADMLKPIATGMTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWVEMPIGMGDGWPARQAGTKLSVVVDGELYAFDPSSSLDSGNIKVYDQKEDAWKVVIGKVPICDFTDSESPYLLAGFHGKLHIITKDANHDIAVLQADLRDNLGFPPSTSPSCSAASSHEHSDLLAETETVVWKVIATRDFGTAELVSCQVLDI* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0394 477 Pfam Kelch motif 219 267 IPR006652 GO:0005515
Vvi18g0394 477 Pfam Kelch motif 171 216 IPR006652 GO:0005515
Vvi18g0394 477 SMART kelc_smart 183 229 IPR006652 GO:0005515
Vvi18g0394 477 SMART kelc_smart 230 280 IPR006652 GO:0005515
Vvi18g0394 477 PANTHER OS02G0202900 PROTEIN 16 476 IPR045887 -
Vvi18g0394 477 Pfam F-box domain 44 82 IPR001810 GO:0005515
Vvi18g0394 477 Gene3D - 85 384 IPR015915 GO:0005515
Vvi18g0394 477 SMART fbox_2 46 86 IPR001810 GO:0005515
Vvi18g0394 477 SUPERFAMILY F-box domain 39 83 IPR036047 GO:0005515
Vvi18g0394 477 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Vvi18g0394 477 MobiDBLite consensus disorder prediction 12 26 - -
Vvi18g0394 477 SUPERFAMILY Kelch motif 106 407 IPR015915 GO:0005515
Vvi18g0394 477 CDD F-box_AtAFR-like 42 86 - -
Vvi18g0394 477 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0394 Vvi-Chr18 3963941 3965374 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0394 46 406 Miscellaneous Gene Families AT4G33900 24.728 2.12e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0394 - - vvi:100248808 964.526