Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0393 ATGGCGGGAGAAGAGCTGATTGAGCTTAAGTTTAGGCTTGCTGATGGCACCGACATCGGTCCAAACAAGTATAATCCAACTACCTCTGTGGGATCTCTCAAAGAAAAGATACTTGCACAATGGCCTAAAGACAAAGAAAATGGTCCAAAGACTATCAACGACATGAAGCTTATTAACGCAGGAAAGATACTTGAAAACAACAGAACACTTGCTGAGTCCAGACTCCTAGTTGGTGAACTTCCAGGAGGGGTCATCACAATGCATGTTGTCGTTCGTCCTCCTTTGTCAGACAAAAACACTGAGAAACAGCAGGATGATTCACCAAAGAAGAGCCGGTGTTCGTGCTCTATCCTATAA 357 0.4398 MAGEELIELKFRLADGTDIGPNKYNPTTSVGSLKEKILAQWPKDKENGPKTINDMKLINAGKILENNRTLAESRLLVGELPGGVITMHVVVRPPLSDKNTEKQQDDSPKKSRCSCSIL* 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0393 118 SUPERFAMILY Ubiquitin-like 3 95 IPR029071 -
Vvi18g0393 118 PIRSF MUB 1 118 IPR017000 -
Vvi18g0393 118 MobiDBLite consensus disorder prediction 93 118 - -
Vvi18g0393 118 CDD Ubl_MUBs_plant 6 94 - -
Vvi18g0393 118 ProSiteProfiles Ubiquitin domain profile. 7 75 IPR000626 GO:0005515
Vvi18g0393 118 Gene3D - 1 100 - -
Vvi18g0393 118 Pfam Ubiquitin-2 like Rad60 SUMO-like 6 116 IPR039540 -
Vvi18g0393 118 PANTHER UBIQUITIN-LIKE PROTEIN 3 HCG-1 PROTEIN 1 117 IPR040015 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0393 Vvi-Chr18 3957265 3960079 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0393 - - vvi:100243670 239.58