Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0389 ATGGAGCGTCTGCGAAATGGATATTTGTTTTCTGAGATATGCAGACGTGAGCTTGAACACACTCAGAAGTACCCACATGCAAAGTTGATAAAACTTGGAATTGGTGATACGACAGAGCCTATACCGGACATTATTACATCAGCTATGGCTGAGCATGCACATGCTTTATCAACTATTAGAGGTTATAGAGGGTATGGAGCTGAGCAAGGCAACATGGAATTAAGGAATGCAATTGCACAAACATTCTACAGAGATATGGGTATCAAAGCAAATGAGGTTTTTGTATCAGATGGGGCGCAATGTGATATTTCTCGTATCCAGATGCTTCTGGGATCCAATGTAACAGTGGCTGTGCAGGATCCATCTTTTCCGGCATATATGGATTCCAGTGTTATAATTGGTCAATCTGGAAACTTCAAAGAGGAGACCGGGAAGTATGAGAACATTTTGTACATGAACTGTGGACCTGAGAGTAATTTTTTTCCAGACCTGTCAAATACTCCAAGGACAGATATAATTTTCTTATGCTCTCCAAACAATCCAACTGGTCATGCTGCATCCCGGCAGCAATTGGAGCAACTGGTGGAGTTTGCAAAAGCAAATGGATCAATTATTATACACGATTCTGCATATGCTGCTTATATAACAGATGAGAGCCCAAGATCAATCTTTGAAATTCCTGGTGGCAGAGAGGTTGCAATTGAAATATCATCGTTCTCCAAATTTGCTGGGTTCACGGGTGTTCGCCTTGGTTGGACAGTGGTTCCTGAAGAGCTGTTATATTCAAATGGGTTTCCAGTCATAAAGGACTATAATCGCATTGTGTGCACCTGTTTCAATGGTGCATCCAGCATAGCTCAGGCTGGTGGTCTAGCATGCCTTTCCTCAGATGGTTACCTGGCCATGAACGCAGTCCTTGATTACTACAAGGAGAATGCCAAAATAATCATGGACACATTTACATCACTTGGATTGAAGGTACATGGGGGCAAAAATGCACCATACATGTGGGTTCATTTTCCAGGCTTAAGATCTTGGGATGTATTCAATGAGATTCTGGAGAAAACGCACATAATAACTGTTCCTGGAACGGGATTTGGTCCTGGTGGTGAAGGGTACATTAGAGTGAGCGCATTTGGGCAGAGAGAGTCTGTAATTGAAGCTTCAAGGAGGCTGAAAAATCTTTTGAAATAA 1194 0.4221 MERLRNGYLFSEICRRELEHTQKYPHAKLIKLGIGDTTEPIPDIITSAMAEHAHALSTIRGYRGYGAEQGNMELRNAIAQTFYRDMGIKANEVFVSDGAQCDISRIQMLLGSNVTVAVQDPSFPAYMDSSVIIGQSGNFKEETGKYENILYMNCGPESNFFPDLSNTPRTDIIFLCSPNNPTGHAASRQQLEQLVEFAKANGSIIIHDSAYAAYITDESPRSIFEIPGGREVAIEISSFSKFAGFTGVRLGWTVVPEELLYSNGFPVIKDYNRIVCTCFNGASSIAQAGGLACLSSDGYLAMNAVLDYYKENAKIIMDTFTSLGLKVHGGKNAPYMWVHFPGLRSWDVFNEILEKTHIITVPGTGFGPGGEGYIRVSAFGQRESVIEASRRLKNLLK* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0389 397 Pfam Aminotransferase class I and II 28 384 IPR004839 GO:0009058|GO:0030170
Vvi18g0389 397 NCBIfam LL-diaminopimelate aminotransferase 3 394 IPR019942 GO:0008483
Vvi18g0389 397 Gene3D - 39 296 IPR015421 GO:0003824
Vvi18g0389 397 Gene3D Aspartate Aminotransferase, domain 1 9 393 IPR015422 GO:0003824
Vvi18g0389 397 CDD AAT_like 30 393 - -
Vvi18g0389 397 SUPERFAMILY PLP-dependent transferases 11 392 IPR015424 -
Vvi18g0389 397 PANTHER AMINOTRANSFERASE 1 397 IPR019942 GO:0008483
Vvi18g0389 397 FunFam LL-diaminopimelate aminotransferase, chloroplastic 39 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0389 Vvi-Chr18 3925926 3930364 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0389 K10206 - vvi:100267796 791.186