Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0386 ATGCTCGCACCGCAAATTACTCTCTTTCAACCGCCTTCCCTGTTCACCATTCGAAGGTCTCAATCACCGGAGCCGAGAAAGAACTCGAAAACATGGAAGAGTAACTGCAAAAGTCCCACAAATTTTCTTTGCTTTTCTTTGAAAACTTCTTCTTCCACGACCGAATTTTCTAATTCTTGCAAGTTTTTGAGCTCCCATAAAAATCCAGATGCCGGTTTTTTAAATGTTCAACCAATTGTTGGACATGTCAATGCCAATTTGCTCGCGTTTTGGCTTCAGTCGTGTTGTACAGTAAGAGAAGTTAGAAGGGTACATGCAGTTGTTTTCAAGTGTCTGGATAACTCTGTGACATATGTCAATAATAATTTGATTAGTGCTTATTCGAGATTCGGGAAGTTAGTGGAGGCTCGCAAGGTGTTTGACAAAATGCCGGAGCGAAATGTTGTTTCTTGGACTGCTGTTGTTAATGGGTATTCGAGATATGGTTTTGATGATGAAGCATTGAGGTTATTCGATGATTGTATTGAGAATGGCGTTCGAGCAAACGGTAAGACTTTTGTTTGTGTTCTGAATTTGTGTAGTAAGAGATTGGATTTTGAGCTTGGAAGGCAAATTCATGCTTGTATTGTGAAAGATAACTGGAGGAACTTGATTGTTGATAGTGCTCTTGTTTGCTTCTATGCACAATGTGGTGATCTGTCTGGGGCTTTTCATGCGTTTGATCAAATGCCTGAGCGGGATGTAGTTTGCTGGACAACCATGATTACTGCTTGCTCCCAACAAGGGCGTGGAACAGAGGCTTTGTCTATGTTCTCACAAATGATGTTCAACACATCTTCTCCTAATGAGTTTACAGTGTGTAGCGTTTTGAAGGCTTGTGGAGAGGAGAAGGCTTTAGAATTTGGAAAGCAGTTACATGGTGCCATAATTAAGAAGATGTTTAAGGAAGATGTTTTCATAGGGACTTCCTTAGTGGGCATGTATGCAAAGTGTGGGGAAATATTAGATTCAAGAAAAGTGTTTGATGGAATGAAGAAGAGAAACACGGTTACGTGGACTTCTATCATAGCTGGATATGCTCGTAATGGGCAGGGGGAGGAGGCCATTAGCCTCTTTCGAGTGATGAAAAGACGGAAGATATTTGCTAACAACTTGACTGTCGTAAGCATCCTCAGAGCATGTGGCTCAACTAGGAATTTACTGATGGGAAAGGAAGTTCATGCACAGATCATGAAGAATTCCATGCAAAGCAACATCTACATAGGAAGCACTCTAGTATGGTTCTACTGCAAATGTGAAGAGCACCCTTTTGCCTCGAAGGTCCTCCAAAACATGCCTCTTAGAGACGTGGTCTCATGGACTGCTATAATTTCTGGTTATACCAGTCTTGGGCATGAACCTGAGGCTCTTGAATTCTTGAAAGAAATGTTGGAGGAAGGTGTGGAGCCAAACCCTTTCACTTATTCATCGGCTTTGAAAGCATGTGCTCACTTAGAAGCTATTCTGCAAGGGAAATTGATTCACTCTTCTGTGAACAAAACACTTGCGCTGTCCAATGTTTTTGTGGGTAGTGCTTTAATTAATATGTATGCAAAATGTGGATATGTTTCTGAGGCAATCCAGGTTTTTGATAGCATGCCACAACGGAATTTGGTTTCTTGGAAGGCAATGATTGTGGGTTATGCGAGGAATGGGCTCTGCGGAGAAGCTTTGAAGCTCATGTACCGTATGCAAGCAGAAGGTATCGAGGTGGATGATTATATCCTTACGACAGTCCTTAGTGCATGTGGAGATGTTGAGTGGAATATGGAGTCTTCATCTGACCATTGCTTGCAGTCAAGTTGA 1845 0.4184 MLAPQITLFQPPSLFTIRRSQSPEPRKNSKTWKSNCKSPTNFLCFSLKTSSSTTEFSNSCKFLSSHKNPDAGFLNVQPIVGHVNANLLAFWLQSCCTVREVRRVHAVVFKCLDNSVTYVNNNLISAYSRFGKLVEARKVFDKMPERNVVSWTAVVNGYSRYGFDDEALRLFDDCIENGVRANGKTFVCVLNLCSKRLDFELGRQIHACIVKDNWRNLIVDSALVCFYAQCGDLSGAFHAFDQMPERDVVCWTTMITACSQQGRGTEALSMFSQMMFNTSSPNEFTVCSVLKACGEEKALEFGKQLHGAIIKKMFKEDVFIGTSLVGMYAKCGEILDSRKVFDGMKKRNTVTWTSIIAGYARNGQGEEAISLFRVMKRRKIFANNLTVVSILRACGSTRNLLMGKEVHAQIMKNSMQSNIYIGSTLVWFYCKCEEHPFASKVLQNMPLRDVVSWTAIISGYTSLGHEPEALEFLKEMLEEGVEPNPFTYSSALKACAHLEAILQGKLIHSSVNKTLALSNVFVGSALINMYAKCGYVSEAIQVFDSMPQRNLVSWKAMIVGYARNGLCGEALKLMYRMQAEGIEVDDYILTTVLSACGDVEWNMESSSDHCLQSS* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0386 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 519 549 IPR002885 -
Vvi18g0386 614 Gene3D Tetratricopeptide repeat domain 301 401 IPR011990 GO:0005515
Vvi18g0386 614 Gene3D Tetratricopeptide repeat domain 80 210 IPR011990 GO:0005515
Vvi18g0386 614 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 504 604 - -
Vvi18g0386 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 147 181 IPR002885 -
Vvi18g0386 614 NCBIfam pentatricopeptide repeat 451 484 IPR002885 -
Vvi18g0386 614 NCBIfam pentatricopeptide repeat 525 551 IPR002885 -
Vvi18g0386 614 NCBIfam pentatricopeptide repeat 149 182 IPR002885 -
Vvi18g0386 614 NCBIfam pentatricopeptide repeat 552 585 IPR002885 -
Vvi18g0386 614 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Vvi18g0386 614 NCBIfam pentatricopeptide repeat 350 383 IPR002885 -
Vvi18g0386 614 NCBIfam pentatricopeptide repeat 121 149 IPR002885 -
Vvi18g0386 614 Gene3D Tetratricopeptide repeat domain 516 611 IPR011990 GO:0005515
Vvi18g0386 614 Gene3D Tetratricopeptide repeat domain 214 300 IPR011990 GO:0005515
Vvi18g0386 614 Gene3D Tetratricopeptide repeat domain 402 515 IPR011990 GO:0005515
Vvi18g0386 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Vvi18g0386 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi18g0386 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 348 382 IPR002885 -
Vvi18g0386 614 Pfam PPR repeat family 246 293 IPR002885 -
Vvi18g0386 614 Pfam PPR repeat family 448 496 IPR002885 -
Vvi18g0386 614 Pfam PPR repeat family 347 394 IPR002885 -
Vvi18g0386 614 PANTHER OS07G0578800 PROTEIN-RELATED 83 195 IPR045215 GO:0003723|GO:0009451
Vvi18g0386 614 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 182 298 - -
Vvi18g0386 614 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 483 IPR002885 -
Vvi18g0386 614 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 299 408 - -
Vvi18g0386 614 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 409 503 - -
Vvi18g0386 614 Pfam PPR repeat 121 148 IPR002885 -
Vvi18g0386 614 Pfam PPR repeat 149 179 IPR002885 -
Vvi18g0386 614 Pfam PPR repeat 552 582 IPR002885 -
Vvi18g0386 614 Pfam PPR repeat 524 550 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0386 Vvi-Chr18 3906073 3907917 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0386 456 601 Glycoside Hydrolase AT3G49170 29.333 3.50e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0386 - - vvi:100252377 1247.26