Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0378 ATGGCAGAGCAAACCCAGATAGAAATCAAACCTCCACAACCCGCTCACCATTCCGATGCCGGTGATGATCAAGTGCTAGAGCAGCAGGTTCGGTTCTTCAAGTCTGGCACTCGAAAGAGAGAGGACAGCTGGGTCATCTCCCTCTTCGTGGTCCTCCACATTGTAGCCTTCGCAGCCACCATGTTTGTCAATGATTGTTGGCAAAACTCTCACCGTGATTGCGCCATCAAAGTTCTTGGACGCCTGTCCTTTCAGCCACTTTGGGAGAATCCGCTGCTCGGTCCTTCCTCGTCCACTCTAGATGAAATGGGGGCTCTTCAACAGACATTTTTGGCAAATCATCATCAAACTTGGCGTCTTTTCACGTGCCTATGGCTGCATGCTGGAGCAATTCACCTTATTATTAACCTTTCTAGTGTTATTTTTGTTGGAATTCACTTGGAACAAGAGTTTGGACCACTGAGGATTGGTATGGTATACATACTATCTGCTTTTTTCGGTAGTTTGGTAGCTACCCTTTTTCTTCAAAAGAGCCCTGCAGTTGGTTCATCTGGTGCTCTGTTTGGACTACTAGGCTCCATGCTTTCCGGTCTTATATGTAACTGGAAAGTTTACACTGATAAGCTTGCAGCTCTGTCTGCACTTCTCCTTGTAGCCGTGATCAATTTTGCACTTGGCTTGCTACCTTATGTTGACAACTTTTCAAACTTGGGAGGGTTTATATCAGGGGTCCTTCTAGGATTTGTTCTCCTATTCAGCCCTAGGCTTCCAAGAATGGCTGAAAAAAAAGGTGGCTTCTTTGATTACAGTGTCAAAAAATCCATCAGATTAAAGCAGAAATTGGACAGGCCGGTGCTGAGGAGTGTTTCTTTTGTTCTCTTTGGTCTTGTATTAGCAGGAGCCATTGTTGCTGTTCTTCATGGCATAGACATGAACAAATACTGCAGTTGGTGTCAGTATATCAATTGTGTCCCTTCCAACAGGTGGAGCTGCAATACCAAAGTAACAGCTTGTCAGGTAGAGTTGTGA 1029 0.4509 MAEQTQIEIKPPQPAHHSDAGDDQVLEQQVRFFKSGTRKREDSWVISLFVVLHIVAFAATMFVNDCWQNSHRDCAIKVLGRLSFQPLWENPLLGPSSSTLDEMGALQQTFLANHHQTWRLFTCLWLHAGAIHLIINLSSVIFVGIHLEQEFGPLRIGMVYILSAFFGSLVATLFLQKSPAVGSSGALFGLLGSMLSGLICNWKVYTDKLAALSALLLVAVINFALGLLPYVDNFSNLGGFISGVLLGFVLLFSPRLPRMAEKKGGFFDYSVKKSIRLKQKLDRPVLRSVSFVLFGLVLAGAIVAVLHGIDMNKYCSWCQYINCVPSNRWSCNTKVTACQVEL* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0378 342 PANTHER RHOMBOID-RELATED 17 331 IPR002610 GO:0004252|GO:0006508|GO:0016020
Vvi18g0378 342 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g0378 342 Pfam Rhomboid family 113 251 IPR022764 GO:0004252|GO:0016020
Vvi18g0378 342 SUPERFAMILY Rhomboid-like 41 256 IPR035952 -
Vvi18g0378 342 Gene3D - 37 253 IPR035952 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0378 Vvi-Chr18 3842548 3845101 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0378 - - vvi:100259231 666.381