Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0376 ATGGAAACCCCTGTAAATCCTTCAAATTCTCGCAGGTTTCATTCGCATTCATCGCTAGCTCCCATGACGCCGCTCGCTGACGATTCGGTGAAGCTGCAGATTGCTTCGGATTTTAGCAGTCTGGGGAATCCTATTCAATCCGTTCCACTGCAATTGTTTGAGCAAAGATGCGAGAAATTTTCTAATGGAAGTGGAGGACAGTCTGAAGACGGAGAGGATGAGGAGTTTCATATTTTGGGGCATCCCATGTGTTTGAAGAGGCCGAGAGACGAGCAATTTTCGAGGTCTTCTAGCCCTTCTAAGGTGGCTTTGGTTGAGTCCGGGCTTGAGCAGAGGCGAGTAGCGGTGAGGGCTTGGGGAAACCAGCCGCTTAGTGTTGCTGATCCTGATGTTTTCCAAATAATGGAGAAGGAGAAGAAGAGGCAGTTTAAAGGAATTGAGCTTATAGCTTCTGAGAATTTTGTGTGTAGGGCTGTGATGGAAGCCCTTGGGAGCCATTTGACAAACAAATATTCAGAAGGAATGCCAGGTGCAAGATATTACACGGGTAATGACTACATTGATCAGATTGAATTACTTTGCTGCAGGCGTGCCTTGGCGGCTTTTCATCTTGATTCTGAGAAATGGGGTGTAAATGTCCAGCCATATTCGTGTACATCAGCTAATTTTGCTGTGTACACTGGGCTTTTACTTCCCAAGGATCGGATTATGGGTTTGGATTCGCCCTCTGGTGGTCATCTGAGTCATGGGTATTACATGCCAAGCGGGAAAAAGGTTTCAGGTACATCAATATTTTTTGAGAGTCTCCCTTATAAAGTGAACCCACAAACTGGGTATATTGATTATGATAAACTAGAGGAGAAGGCTCTTGATTTCCGTCCCAAGATACTTATTTGTGGTGGGAGTTCATATCCACGGGAGTGGAATTACGCAAGGTTCAGGCAGATTGCAGATAAATGTGGCGCAGTATTAATGTGTGACATGGCTCAGATTAGCGGTATTGTGGCGGCTAAGGAGTGTGCAAGTCCGTTTGATTATTGTGATATTGTTACCTCGACAACTCACAAAAATCTCCGAGGTCCTAGGGGAGGTATTATTTTTTACAGAAAAGGTGCAAAGGCAAGGAAGCCTGGCATGCTTCTTAGCCAAGGAGATGATAGTAACCAATATGATTTTGAGGAGAGGATAAACTTTGCTGTCTTCCCTTCATTACAAGGGGGCCCTCACAATAATCACATAGCTGCTCTTGCCATAGCCTTAAAACAAGTGGCCACACCAGAGTACAAAGCATATATGCAACAGGTGAAAAAAAATGCTCAGGCTTTAGCAGCTGCTTTGCTCAGAAAAAGTTGCAAATTGGTGACAGAAGGTACTGACAACCATTTGTTGCTCTGGGATCTTACAGATCTACACATAACAGGCAAGAACTATGAGAAGGTCTGTGAGCTGTGCCACATTACTCTCAATAAAACTGCTATATATGGTGACAATGGTGCCATTTCCCCTGGAGGGGTAAGGATCGGTTCTCCTGCCATGACAACAAGAGGTTGTCTGGAGGCTGATTTTGAGACAATTGCAGAGTTTCTCTACAGAGCAGCTGTGATTACAAGTGCAGTTGTTACACAAAGAGAACTTAGAAAGTTTCCGCGAGATTTTTTCAAGTGTCTCCAGAACAACAAGGATATTGTTGAGCTCCGAAATCAAGTGGAGACATTTGCTTCCCAGTTTGCAATGCCAGGGTTTGACATTTGA 1752 0.4441 METPVNPSNSRRFHSHSSLAPMTPLADDSVKLQIASDFSSLGNPIQSVPLQLFEQRCEKFSNGSGGQSEDGEDEEFHILGHPMCLKRPRDEQFSRSSSPSKVALVESGLEQRRVAVRAWGNQPLSVADPDVFQIMEKEKKRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNDYIDQIELLCCRRALAAFHLDSEKWGVNVQPYSCTSANFAVYTGLLLPKDRIMGLDSPSGGHLSHGYYMPSGKKVSGTSIFFESLPYKVNPQTGYIDYDKLEEKALDFRPKILICGGSSYPREWNYARFRQIADKCGAVLMCDMAQISGIVAAKECASPFDYCDIVTSTTHKNLRGPRGGIIFYRKGAKARKPGMLLSQGDDSNQYDFEERINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQALAAALLRKSCKLVTEGTDNHLLLWDLTDLHITGKNYEKVCELCHITLNKTAIYGDNGAISPGGVRIGSPAMTTRGCLEADFETIAEFLYRAAVITSAVVTQRELRKFPRDFFKCLQNNKDIVELRNQVETFASQFAMPGFDI* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0376 583 CDD SHMT 128 552 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g0376 583 Gene3D Aspartate Aminotransferase, domain 1 128 579 IPR015422 GO:0003824
Vvi18g0376 583 MobiDBLite consensus disorder prediction 1 17 - -
Vvi18g0376 583 SUPERFAMILY PLP-dependent transferases 114 582 IPR015424 -
Vvi18g0376 583 Gene3D - 153 433 IPR015421 GO:0003824
Vvi18g0376 583 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 120 582 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Vvi18g0376 583 FunFam Serine hydroxymethyltransferase 153 371 - -
Vvi18g0376 583 Pfam Serine hydroxymethyltransferase 125 528 IPR039429 -
Vvi18g0376 583 MobiDBLite consensus disorder prediction 1 23 - -
Vvi18g0376 583 Hamap Serine hydroxymethyltransferase [glyA]. 123 580 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0376 Vvi-Chr18 3823004 3829252 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0376 K00600 - vvi:100267713 1140.18