Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0374 ATGGAAATTCTACACAGTGGTTCTCTTCCTCCTCATCCTTTTCCTTCGAGTCCCTTTCCCGACACTTGTTTCCTTCACCTATCACCACATAACCGCAACTTCTTCCCATTGCCCAAATCTAAATTTCGAGTTTCTACGCCTAGGATTATTGGTTTCAAACACTCAACTGTCTCAAATCACATACACCCACAAACCCTTCTCCCTTCATTTGTTGATACTCTGACCAATTCTTCTCCTACTGAGATTGGTGACTCTATTTCTCTACTGAACCGATGCAGCACACTGTCTGAATTCCGGCAAATCCATGGCCGGATTGTGAAATTAAATGCTTTAAAATGGAAGAGTTCTATTGGAAATAAGCTGGTAGTACTCTATTGCAAGAATCAGTGGTCGCTGGAAGATGCTCGAAAGTTGCTTGATGAAATTCCCAACAGAACAGTACCTGCTTATGCTGCATTGATCAGATCATATTGTCGGTCTGAACAGTGGGATGAACTTTTTTCCTTGTTTCGGTTGATGGTTTATGAGGGGATGCTCCCTGATAAATATCTTGTGCCCACGATTCTAAAAGCATGCTCAGCTATGCTGTTATTGAGGATTGGTAAAATGGTTCATGGGTTTGTGATAAGGAAGAGTGTAGAGTCAGATGTTTTTGTTGGGAATGCACTCATTCACTTTTATTCAAATTGTGGGGATTTGGGATCTTCAAGAAGTGTTTTTCACTCCATGCAGGAAAGAGATGTAGTTTCATGGACTGCCCTAATTTCTGCTTACATGGAGGAAGGTCTTCTGGATGAGGCAAAACATATTTTTCATTTGATGCAGTTGGATGGAGTTAAGCCTGATTTAATTTCTTGGAGTGCACTTTTATCGGGCTTTGCTCGGAATGGAGAGATTGATTTGGCTCTTGAAACTTTGGAGGAAATGCCAGAGAGGGGGCTGCAGCCAACCGTTAATTCTTGGAATGGGATTATCTCAGGTTGTGTTCAAAATGGATATCTGGAAGATGCTTTGGATATGTTTTCTAGGATGCTATGGTATCCCGAGGATCCAAACATCATAACGATTGCAAGCATCTTACCAGCTTGTACAGGTTTGAAAGCTTTGCGTTTAGGAAAGGCAATTCATGCAATTGCCCTTAAACATGGAATTGTTGGGAATGTTTATGTGGAGGGATCGGTAATTGATATGTATTCAAAATGTGGGAGCTATGATTATGCAGAGAAGGTTTTTGTTAAGGCAGAGAACAAAAATACAGCCATGTGGAACGAGATGATTGCAGCTTATGTAAATGAGGGAAAGGTGGAGGATGCATTAGGCCTTCTTAGATCAATGCAAAAGGATGGATGGAAACCTGATGTAATTACCTACAACACTATACTTTCTGGGCATGCAAGAAATGGGCTTAAGACACAGGCATTTGAGTTATTGTCTGAGATGGTCCAGATGGGTTTAAAGCCAAATGTCGTTTCGTTTAACGTCCTAATATCTGGTTTTCAACAATCTGGGCTAAGTTACGAAGCTTTGAAGGTGTTCCGGATCATGCAATCACCTTCTGATGGTTGCAATCCTAATGAAGTTCTAAATTTGTCAATGAGACCTAACCCCATCACTATTACTGGTGCTCTTCCAGCTTGTGCTGACTTAAACTTATGGTGCCAAGGGAAAGAAATCCATGGATACACTTTGAGGAATGGTTTTGAGCCCAATATCTTTGTTTCAAGTGCATTGGTTGACATGTATGCAAAGTGCCATGACATGGATTCAGCAAATAAGGTATTCTTCAGAATTGACGGTAGAAACACAGTTTCCTGGAATGCTTTAATGGCGGGCTATATTTACAATAAGCAGCCAGAAGAGGCTCTTAAACTCTTTCTTGAAATGTTGGGAGAAGGCCTTCAGCCTAGCTCAATTACCTTCATGATACTTTTCCCTGCTTGTGGTGATATAGCAGCCATAAGGTTTGGGCGAGGATTACATGGCTATGCTGCTAAGTGTCAATTGGACGAGTTGAAAAATGCCATTGCAAGTGCTTTAATAGACATGTATGCAAAGTGTGGTAGCATTTTGGATGCGAAATCAGTGTTTGACTCTGAAGTTGAAAAAGATGTGCCTCTATGGAATGCCATGATCTCTGCCTTTTCAGTTCATGGGATGGCCAGGAATGCTTTTGCCGTGTTTGTACAAATGGAATTATTGGGAATTCTACCTGACCATATTACCTTTGTTTCACTTCTTTCAGCTTGTGCTCGAGATGGGTTGGTAGAGGAAGGGTGGAAATATTTCAATTCAATGGAGATATCCTATGGGGTTGCTGCTACTTTGGAACACTATACATGCATGGTTGGCATTTTAGGTGGTGCCGGTTTACTAGATGAGGCTCTTGACTTCATTAGACAAATGCCATATCCTCCTGATGCTTGTATGTGGGCTACTCTTTTACAAGCTTGCAGAGTTCATTCAAATCCAGAAATAGGTGAAAGAGCTGCAAAAGCTCTTTTTGAGCTTGAACCAGATAATGCTACTAACTATATGCTCCTGTCCAATATCTATGTCTCATCAGGGATGTGGGACTTCGCAAAGAACTTGAGGAGTTTTATGAGGGGCCGTAAGTTGTTAACTATAAAGGAGTGCAGCTATTTAACCGTTGGTTCACATATATGCACATTTAAAGGGGGAGAAAGCTCTCATCCAGAGTTGGAGGAAATTCTAGAGGCATGGGACAAATTGGCCAGGAAAATGGAGCTTTCTGGGTATTTTCCTCTTGATCCTGTTTTTGATGATGAAGAAAAAGAGCTGGATCCATTCTCTTGCCTACACACTGAAAAGTTGGCTATATGTTTTGGCATCATCTCATCAAATACTTACCGTCCCGTCCATGTCTCAAAGAATATAAGGATGTGTATCGACTGTCATACATCAGCTAAACTCATATCTAAAATTGATGGAAGGGAAATCTTTGTGAAGGATGTGTGCTTTTATCACCATATGAAGGACGGGATATGCAGCTGCCAGGATAGGTGGTGA 3027 0.4123 MEILHSGSLPPHPFPSSPFPDTCFLHLSPHNRNFFPLPKSKFRVSTPRIIGFKHSTVSNHIHPQTLLPSFVDTLTNSSPTEIGDSISLLNRCSTLSEFRQIHGRIVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSLFRLMVYEGMLPDKYLVPTILKACSAMLLLRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLLDEAKHIFHLMQLDGVKPDLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKLLTIKECSYLTVGSHICTFKGGESSHPELEEILEAWDKLARKMELSGYFPLDPVFDDEEKELDPFSCLHTEKLAICFGIISSNTYRPVHVSKNIRMCIDCHTSAKLISKIDGREIFVKDVCFYHHMKDGICSCQDRW* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0374 1008 Gene3D Tetratricopeptide repeat domain 199 349 IPR011990 GO:0005515
Vvi18g0374 1008 Gene3D Tetratricopeptide repeat domain 393 528 IPR011990 GO:0005515
Vvi18g0374 1008 Gene3D Tetratricopeptide repeat domain 529 669 IPR011990 GO:0005515
Vvi18g0374 1008 Gene3D Tetratricopeptide repeat domain 672 914 IPR011990 GO:0005515
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 453 487 IPR002885 -
Vvi18g0374 1008 Pfam E motif 820 869 IPR046848 -
Vvi18g0374 1008 Pfam DYW family of nucleic acid deaminases 927 1008 IPR032867 GO:0008270
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 320 345 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 284 317 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 707 738 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 421 454 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 603 636 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 455 489 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 149 181 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Vvi18g0374 1008 NCBIfam pentatricopeptide repeat 740 770 IPR002885 -
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 738 768 IPR002885 -
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 601 635 IPR002885 -
Vvi18g0374 1008 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 554 666 - -
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 488 524 IPR002885 -
Vvi18g0374 1008 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 487 945 IPR046960 GO:0003723|GO:0009451
Vvi18g0374 1008 FunFam Pentatricopeptide repeat-containing protein At5g03800 201 337 - -
Vvi18g0374 1008 Pfam Pentatricopeptide repeat domain 270 331 IPR002885 -
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Vvi18g0374 1008 FunFam Pentatricopeptide repeat-containing protein mitochondrial 674 902 - -
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat family 600 647 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat family 452 499 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat family 702 751 IPR002885 -
Vvi18g0374 1008 Gene3D Tetratricopeptide repeat domain 63 198 IPR011990 GO:0005515
Vvi18g0374 1008 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 452 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat 677 697 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat 221 247 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat 150 177 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat 393 413 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat 777 801 IPR002885 -
Vvi18g0374 1008 Pfam PPR repeat 421 449 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0374 Vvi-Chr18 3791739 3794765 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0374 168 717 Glycoside Hydrolase AT3G49170 25.203 6.35e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0374 - - vvi:100265954 2026.14