Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0373 ATGGCCTTTTCTCTCTCTAACCACCTCCTCTTCACCCCAAAACCCTCTAAAACCCTTGCTCTTCATCCTCCTCATCCCTCTAAACCCATTCTAGGGTTTCGTCTCTCTACTTCCTCCCCAATTCTCAGACGTTCCTTCAAGCCTTTTCTCGCTCTCCAAGATTCTACTCCCTATACAAACAATGAAGAGGAGGGTAGTCGGTATGATGTTAAAACATCAAAAAGTGAAGCAGATCAGAAACCTCTGTCTGTTTTGAAGTCGCTTATTAAAGCATACAAAGATGCTGTTTTAGATGGAGATGAAAAGGCTGTATCTGAAATTGAAGCAATGATAGACACGATTGAAAGTGAGAAGGCTGAATTGGCACAGAAAGTTTCTGCTTTATCAGCAGAAATAACATCTGGGAAGGAGAAATATATTCGTTTACAAGCAGATTTTGATAATTTTAGGAAAAGATCAGAGAAGGAAAGGCTTACAGTAAGAACTGATGCTCAAGGAGAAGTAGTTGAGAGCCTTTTGCCCATGATTGACAATTTTGAGAGAGCCAAACAACAAATCAAACCTGAAACTGAAAAGGAGAAAAAAATTGATACAAGCTATCAGGGTATATACAAGCAATTTGTGGAGATCATGAGGAGTTGTCATGTGGCTGCTGTAGCAACAGTGGGAAAGCCATTTGATCCTGCACTGCATGAGGCCATTGCCCGTGAGGAGTCTCAAGAATTCAAGGAAGGGATTATAATTCAAGAAATTCGCCGGGGCTTCCTCCTTGGTGATCGACTTCTAAGACCAGCAATGGTTAAAGTCTCCACAGGCCCTGGTAGGAAGAAAACTTCTGCTGTTGCTGATAAATCTACAGGCCAACCTGCAACAGCTGCTGGAGTAGATGAACGATAG 897 0.4214 MAFSLSNHLLFTPKPSKTLALHPPHPSKPILGFRLSTSSPILRRSFKPFLALQDSTPYTNNEEEGSRYDVKTSKSEADQKPLSVLKSLIKAYKDAVLDGDEKAVSEIEAMIDTIESEKAELAQKVSALSAEITSGKEKYIRLQADFDNFRKRSEKERLTVRTDAQGEVVESLLPMIDNFERAKQQIKPETEKEKKIDTSYQGIYKQFVEIMRSCHVAAVATVGKPFDPALHEAIAREESQEFKEGIIIQEIRRGFLLGDRLLRPAMVKVSTGPGRKKTSAVADKSTGQPATAAGVDER* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0373 298 FunFam Protein GrpE 215 270 - -
Vvi18g0373 298 Coils Coil 104 131 - -
Vvi18g0373 298 Gene3D Head domain of nucleotide exchange factor GrpE 216 270 IPR009012 GO:0006457
Vvi18g0373 298 CDD GrpE 136 269 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 Hamap Protein GrpE [grpE]. 61 271 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 Pfam GrpE 115 271 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 MobiDBLite consensus disorder prediction 269 298 - -
Vvi18g0373 298 PRINTS GrpE protein signature 250 269 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 PRINTS GrpE protein signature 168 183 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 PRINTS GrpE protein signature 223 238 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 PRINTS GrpE protein signature 140 156 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 Gene3D - 98 212 IPR013805 -
Vvi18g0373 298 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 218 272 IPR009012 GO:0006457
Vvi18g0373 298 PANTHER GRPE PROTEIN 72 270 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Vvi18g0373 298 FunFam GrpE protein homolog 97 213 - -
Vvi18g0373 298 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 119 212 IPR013805 -
Vvi18g0373 298 ProSitePatterns grpE protein signature. 226 269 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0373 Vvi-Chr18 3759367 3763234 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0373 K03687 - vvi:100260744 573.548