Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0369 ATGGAGAACGCCGACCCGTTCGCCTCATCGACCGCGCCACTGACCTGGCATGACTTTCTGGAGCGCATGCGACAACCCTCCGCCGCTGATTTCGTCAAAGCAATCAAAAGTTTTATCGTGTCATTCTCAAACAATGCACCAGATCCTGAACGGGACAGTGCTGCTGTGCAAGAGTTTCTTGCCAACATGGAAATGGCTTTCAGGGCTCATCCGCTTTGGGCTGGTTGCTCTGAGGAGGAGCTGGAGAGTGCTGGTGAAGGGTTGGAGAAGTATGTCATGACAAAGTTATATACTCGCGTATTTGCTTCGGTCCCAGATGATTCAAAGTTAGATGAACAACTTTTTGAGAAGATCGGTTTAGTTCAACAGTTCATTCGTCCAGAACAATTGGATATTAAAACAACCTTTCAAAATGAAACATCATGGCTGCTTGCACAGAAAGAGCTACAAAAGATCAATATGTACAAGGCACCAAGAGATAAACTTGTCTGTATTCTCAATTGTTGCAAGGTCATCAATAATTTGTTGCTTAATGCTTCTATTGCTTCGAATGAGGATCCTCCTGGAGCTGATGAGTTTCTTCCTGTCCTAATTTATGTTACCTTAAAGGCAAACCCTCCACAACTGCACTCAAATTTGTTGTATATACTACGGTACAGGCGTCAATCCAGAATGGTTGCAGAAGCAGCTTACTTTTTCACAAACATGCTCTCTGCAGAGTCATTCATCTCAAACATCAATGCAGAATCCCTTTCAATGGATGAAAGAGAGTTTGAAATGAACATGGAATCTGCTCGAGCACTTCTATCTGGCCTCTCGTCTGATTTGGATGGTGTGTTGAAGGAACCTCAACAAAAATCTTTGTACTCTACGAAGGAAAAGGACCCTTCAATAGGATCTGATCTATCATTGCTATCATCTGAAGCAACATCTGGGGCAAAGTTGGAACCTCATGCAAAAGATCAGTTAATAACAAAAGTTCCATCCATTTCTGATTTGGAGAATAAAGGGGCAGCTATGCTTCTGAAAGAGGATCAGGCTAGCCTAGCCTTCCGGGAGTACCCATACTTGTATGCCAATGTTGGTGACCTAACAGTCAATGATGTAGAAGATCTACTAAATCATTATAAACAACTTGTTTTCAAGCATGTTTGCCTTTCCAAAGGATTGGGTGTCCCTGCTCCACCCCTTCCATTGTCCATTTCACAAACTCAAGCCCAAAAGCATGCTGAAACCATGAAGGACTCTGCAGACACCCGAGCTGCTGAAGTGAAGGACAACACCCTTAACGATATTGGTAGCACCAATGATGTTTCAAATCAAGTTTCACTTTTTGAAGTGGAAACCTCTGAATCCAAGTTACCACAAGAGGAAGCAGTTGTACCCCAATAA 1392 0.431 MENADPFASSTAPLTWHDFLERMRQPSAADFVKAIKSFIVSFSNNAPDPERDSAAVQEFLANMEMAFRAHPLWAGCSEEELESAGEGLEKYVMTKLYTRVFASVPDDSKLDEQLFEKIGLVQQFIRPEQLDIKTTFQNETSWLLAQKELQKINMYKAPRDKLVCILNCCKVINNLLLNASIASNEDPPGADEFLPVLIYVTLKANPPQLHSNLLYILRYRRQSRMVAEAAYFFTNMLSAESFISNINAESLSMDEREFEMNMESARALLSGLSSDLDGVLKEPQQKSLYSTKEKDPSIGSDLSLLSSEATSGAKLEPHAKDQLITKVPSISDLENKGAAMLLKEDQASLAFREYPYLYANVGDLTVNDVEDLLNHYKQLVFKHVCLSKGLGVPAPPLPLSISQTQAQKHAETMKDSADTRAAEVKDNTLNDIGSTNDVSNQVSLFEVETSESKLPQEEAVVPQ* 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0369 463 SMART vps9_2 141 261 IPR003123 -
Vvi18g0369 463 SUPERFAMILY VPS9 domain 15 263 IPR037191 -
Vvi18g0369 463 Pfam Domain of unknown function (DUF5601) 33 97 IPR041545 -
Vvi18g0369 463 PANTHER RAB GDP/GTP EXCHANGE FACTOR 11 383 IPR045046 GO:0005085|GO:0016192
Vvi18g0369 463 Gene3D VPS9 domain 105 271 IPR037191 -
Vvi18g0369 463 Pfam Vacuolar sorting protein 9 (VPS9) domain 144 246 IPR003123 -
Vvi18g0369 463 ProSiteProfiles VPS9 domain profile. 108 252 IPR003123 -
Vvi18g0369 463 FunFam Vacuolar protein sorting-associated protein 9A 23 103 - -
Vvi18g0369 463 Gene3D - 23 103 - -
Vvi18g0369 463 FunFam Vacuolar protein sorting-associated protein 9A 105 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0369 Vvi-Chr18 3725437 3732221 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0369 K20131 - vvi:100252293 886.33