Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0358 ATGGCACAAGTACCAGGGTCTCTCTCTACTGAAACAGAGGCGCTGAGCCATTTGATGAGCCTGGTGGAGGCCTTTCGGGCTTTTGATGGAGACAATGATGGGTTGATCTCTGCTGCAGAACTGGGTGGAATCATGGGGTCGCTTGGCTACAATCCGAGCGAACACGATGTGAAGACAATGATGCAGCAAGGAGACACTAACAGACATGGGTTGCTGAGCATTGTGGAGTTTCTGAAGATGAACACCCAGGACATGGATCTAGGGGTCCTGGGACCTTTCCTCAAAAATGCTTTTACACTTTTGGAGGCAGGTGTGGAGGAAGACGACAAGGTGACCGGAGAGGAGCTGCATGGAGTTATAGGGGATATGGAAATAGAGTTATCTTTGGACGACTGCCAGGGTATCATTGCTGCCATGGATGGGGATGGCGATGGATGCGTTCCGAACTTTTGA 453 0.5055 MAQVPGSLSTETEALSHLMSLVEAFRAFDGDNDGLISAAELGGIMGSLGYNPSEHDVKTMMQQGDTNRHGLLSIVEFLKMNTQDMDLGVLGPFLKNAFTLLEAGVEEDDKVTGEELHGVIGDMEIELSLDDCQGIIAAMDGDGDGCVPNF* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0358 150 CDD EFh 21 80 IPR002048 GO:0005509
Vvi18g0358 150 ProSiteProfiles EF-hand calcium-binding domain profile. 16 51 IPR002048 GO:0005509
Vvi18g0358 150 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 20 80 - -
Vvi18g0358 150 Gene3D - 6 148 - -
Vvi18g0358 150 ProSitePatterns EF-hand calcium-binding domain. 29 41 IPR018247 -
Vvi18g0358 150 FunFam Calmodulin-2 A 10 150 - -
Vvi18g0358 150 Pfam EF-hand domain pair 21 80 IPR002048 GO:0005509
Vvi18g0358 150 SMART efh_1 20 48 IPR002048 GO:0005509
Vvi18g0358 150 SMART efh_1 56 84 IPR002048 GO:0005509
Vvi18g0358 150 SUPERFAMILY EF-hand 17 147 IPR011992 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0358 8 80 EF-hand Containing Proteins AT1G66400 35.616 2.13e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0358 - K02183 vvi:100259145 288.115