Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0353 ATGCATCCCTTTTGCTGCATCACCACCGTGTCCGACCCAAATTCGGGGAAACCCTCGCATTCATTGCCGGAATTTCATATGTCACCTCTACCTCCGGCCGTCGGTGGTGGAGGCGTTAGATCTGATTCTGGAAATCGCAGCAACAATCTAAACCACAATCACGGCAATAACATCACCGATCATGGTCGTCTGACGGAGTCAATGTCGCGACCGCCGTCGATTTGTGGCGATCAGCGGGAGGTGAAGATCAACGATATCGTTGGAAATGGAATATCGGGGATTCTTTACAAGTGGGTGAATTATGGCAAGGGATGGCGTCCTCGGTGGTTTGTTCTTCAAGATGGAGTTCTATCTTATTATAAAATCCACGGTCCCGATAAAATCATTGTCAATCAAGAAACAGAGAAAGGATCGAAAGTCATAGGCGAAGAATCGCTCCGGCGAATCAACCGGCACAGGAACGGCAATTCTCAACTCCGGCGCAATCCTGTCGGTGAAGTCCATCTCAAGGTTTCTTCTGTCCGTGAAAGTAAATCCGATGACAAGAGGTTTTCAATTTTTACGGGCACAAAGCGGATGCATCTGAGAGCTGAAACACGCGAAGATAGAGCAGCGTGGATGGATGCATTGCAAGCTGTGAAGGACATGTTCCCAAGGATGTCCAACAGTGAGCTAATGGCTCCTCTAGATAATGTTACTGTATCAACAGAAAAGTTGAGGCAGAGGCTCTTGGAAGAGGGAGTAAGTGAGGCAGCGATCCAGGACAGTGAGCAGATCATGAGGAGCGAGTTTGCGGCTTTGCAGAACCAGATCGTGCTGCTCAAGCAAAAGCAGTTGCTCCTCATTGACACACTTCGACATTTAGAGACAGAAAAAGTTGATCTGGAGAATACACTAGTTGATGAGAGTCAAAGACAGCTGAAAGAGCAAGGTGCTTCATCTAGATTGAGGCAAGACAAATATAGTGAAGGAAGTGGTAGTGAATCTGAAGATGACAATGAAAGAGTTGATGCTGCAGAGGAAGAAACAGATGATGATGATAATACTTTCTTTGATACTCGGGATTTTCTTTCATCAAGTTCTTTTAAAAGTACTGGGTCTGATTTTCGGATATCATCCTTCTCTTCTGATGATGATGATTTTTATGCTGTTGAATCTGAGGACGGTACTGATCCTTCCATCATATCTGTTGGCAAAAACTATCCTCATGTTAAGCGGCGCAATAAATTGCCTGATCCAGTTGAAAAAGAGAAGGGGGTTAGTCTCTGGTCAATGATTAAGGATAATATTGGGAAGGACCTAACAAAAGTTTGTCTTCCTGTTTACTTTAATGAGCCTCTCTCTTCTCTGCAAAAATGTTTTGAAGATCTGGAATATTCATATCTTCTTGATCGGGCTCATGAATGGGGAAAAATGGGAAATAGTCTAATGAGGATTTTGAATGTAGCTGCATTTGCTGTTTCTGGATACGCTTCTACCGAAGGAAGAACATGCAAACCATTTAATCCATTACTAGGGGAGACCTATGAGGCTGATTATCCAGATAAAGGCCTCCGTTTTTTCTCAGAGAAGGTTAGTCATCACCCTATGATTGTTGCATGTCACTGTGAGGGTACGGGATGGAAATTTTGGGCAGATAGCAATTTAAAGAGCAAATTTTGGGGTCGGTCTATTCAGCTTGATCCCATTGGCGCTTTGACTTTGGAATTTGATGATGGAGAAACTTTTCAATGGAGTAAGGGAAATCGTGAGTATTCATGTAAGCTGAAATTCAAGGAGCAGTCAATCATAGACCGGAATCCTCACCAGGTGCAAGGTATAGTTCAGGATAGGCATGGGAAAACAGTGGCAACACTATTTGGAAAGTGGGATGAGAGCATGCATTATGTGATTGGAGACTGTTCTGGCAAGGGGAAAGGAAATGATACTTTATCAGAATCTCATTTGCTATGGAAGCAGTGCAGGCCTCCCAAGTTCCCCACTAGATATAACTTAACACGCTTTGCTATCACACTGAATGAGCTCACTCCTGGATTGAAGGAAAAGTTGCCTCCTACAGATTCAAGGCTCAGACCCGATCAAAGGTGCCTTGAAAACGGGGAATATGAAAAGGCAAATTCAGAGAAGTTGCGGCTTGAGCAGCGACAGCGCCAGTCCCGGAAGATGCAAGAAAGGGGTTGGAAGCCAAGGTGGTTTGTAAAGGATAAAGGCAGCGATACCTATCGCTATGTTGGTGGGTATTGGGAGGCAAGAGAAAAGGGGAACTGGGATTCATGTCCTGATATCTTTGGCCAAATCTCCACTGACCAAATATCGGATTAA 2322 0.4436 MHPFCCITTVSDPNSGKPSHSLPEFHMSPLPPAVGGGGVRSDSGNRSNNLNHNHGNNITDHGRLTESMSRPPSICGDQREVKINDIVGNGISGILYKWVNYGKGWRPRWFVLQDGVLSYYKIHGPDKIIVNQETEKGSKVIGEESLRRINRHRNGNSQLRRNPVGEVHLKVSSVRESKSDDKRFSIFTGTKRMHLRAETREDRAAWMDALQAVKDMFPRMSNSELMAPLDNVTVSTEKLRQRLLEEGVSEAAIQDSEQIMRSEFAALQNQIVLLKQKQLLLIDTLRHLETEKVDLENTLVDESQRQLKEQGASSRLRQDKYSEGSGSESEDDNERVDAAEEETDDDDNTFFDTRDFLSSSSFKSTGSDFRISSFSSDDDDFYAVESEDGTDPSIISVGKNYPHVKRRNKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEDLEYSYLLDRAHEWGKMGNSLMRILNVAAFAVSGYASTEGRTCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWADSNLKSKFWGRSIQLDPIGALTLEFDDGETFQWSKGNREYSCKLKFKEQSIIDRNPHQVQGIVQDRHGKTVATLFGKWDESMHYVIGDCSGKGKGNDTLSESHLLWKQCRPPKFPTRYNLTRFAITLNELTPGLKEKLPPTDSRLRPDQRCLENGEYEKANSEKLRLEQRQRQSRKMQERGWKPRWFVKDKGSDTYRYVGGYWEAREKGNWDSCPDIFGQISTDQISD* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0353 773 SUPERFAMILY Oxysterol-binding protein-like 416 766 IPR037239 -
Vvi18g0353 773 CDD PH_ORP_plant 91 222 - -
Vvi18g0353 773 Gene3D - 694 757 - -
Vvi18g0353 773 Gene3D - 89 217 IPR011993 -
Vvi18g0353 773 Gene3D - 507 581 - -
Vvi18g0353 773 Gene3D - 582 654 - -
Vvi18g0353 773 MobiDBLite consensus disorder prediction 12 76 - -
Vvi18g0353 773 SMART PH_update 89 217 IPR001849 -
Vvi18g0353 773 ProSiteProfiles PH domain profile. 88 215 IPR001849 -
Vvi18g0353 773 Coils Coil 702 722 - -
Vvi18g0353 773 FunFam Oxysterol-binding protein-related protein 2A 694 765 - -
Vvi18g0353 773 MobiDBLite consensus disorder prediction 333 349 - -
Vvi18g0353 773 MobiDBLite consensus disorder prediction 41 66 - -
Vvi18g0353 773 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 90 580 IPR000648 GO:0008289
Vvi18g0353 773 Coils Coil 285 305 - -
Vvi18g0353 773 MobiDBLite consensus disorder prediction 312 332 - -
Vvi18g0353 773 MobiDBLite consensus disorder prediction 304 351 - -
Vvi18g0353 773 Pfam Oxysterol-binding protein 583 752 IPR000648 GO:0008289
Vvi18g0353 773 Pfam Oxysterol-binding protein 421 581 IPR000648 GO:0008289
Vvi18g0353 773 SUPERFAMILY PH domain-like 91 221 - -
Vvi18g0353 773 Pfam Pleckstrin homology domain 96 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0353 Vvi-Chr18 3515403 3530057 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0353 K20456 - vvi:100245477 1487.63