Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0345 ATGGACTTGCATCGAATAGTGAGTGTTATACGCCAGTGTGGCCGATTCCGAGCTTTTCGACATGGAAGATCACTTCATGCTCACATAATCAAACTCGGGGTTTTCAATGACGTGTTTTTTGCCAATAATTTGTTGGCCATGTACGTTGATATCTCTCTTTTGAAAGATGCTCGAAGACTGTTTGATGAAACGCTAGAAAGAAATGTTGCTACATGGACCACAATGATCTCTGCATATTCCAGTAGTGGGAGGCCCGATACTGCTCTCAAATTCTATGTGCAGATGTTAGAGTCCAAATCAGAGACACCAAATGGGTTCCTGTACTCTGCAGTTCTAAAAGCGTGTGGTCTCGTGGGTGATCTTGAATCGGGTAAATTGATCCATGGAAGAGTTTTTAGAGCTAATTTAGGGTTTGATACTGTTTTGATGAACACCCTTTTGGATATGTATGTGAAATGTGGGAGTTTGAGTAGTGCCCGGAAAGTTTTTGATGATATTTTGTGTCCTAGTTCAACTTCGTGGAATACTATGATTTCAGGGTATGGTAAAGAAGGTTTGATGGAGGAGGCTGTGAATTTATTTTATCAAATGCCAGAACCAGATACTGTGTCTTGGAATAGCATTATTGCTGGTTTTGGGTGTAAAGAAAGTTTGGGTGCTTTGAGATTTGTGTGTATGATGCACCGGAAAGGGCTTAAGTTGGATGGATTTACATTTTCTTGTGCTCTTAAGACCTGTGGTTGTTTCCAGTTGTTAGTTATGGTGAAACAGATTCATTGTTACGTCAATAAATCAGGTTTTGGATCCTGCTGTTTTACTGCATCTGCTCTGGTGGATTCATATTCCAACTGCAATGAATTGGATGAAGCAATAAAAATGTTTGATGAATATTCATGCTGCAGTGCCTCTATTCTTGATTGTTTGCCACTTTGGAATTCTATGCTTTCTGGGTATGTTGTTAATGAACAAAATAGCGCTGCTATCAATCTGGTCTCACAAATTCATAGCTTGGGTGCACATGTTGACTCATTCACTTTTGGCAGTGCTTTAAAGGTCTGTATCAACTTGCAGAACTTTAGACTTGGGCTCCAAGTCCAAGGATTGGCTGTCACTAGTGGGTATGAGTTAGACTATGTTGTTGGAAGCATTCTTATTGATCTCTATGCAAACGATGGGAAAATTAAAGATGCATTAAGATTGTTTTACAGGCTTCCAGAGAAAGATATTGTGGTTTGGTCCAGTTTAATCTCTTGGTGCACTAAGATGGGACTAAACTCATTGGTTTTTTCACTGTTCAGGGATATGGTTAATTTGGATATTGAAGTTGATCAGTTTATTATCTCAAGTGTTCTGAAGGCTTGTTCAAGCCTAGTAGGGCTTGGGAGTGGTAAACAGGTCCATTCCTTTTGTGTAAAGAGCGGGTATGAATCAGAGAGGATAACAGTAACATCTCTAATTGACCTGTATGCAAAATGTGGTGAAATTGAGGATGGATTAGCTTTGTTTTATTGTACTTCAGAAAGAGATACTGTGTGTTATACAGGGATCATTATGGGATGTGGGCAAAATGGGAGAGCAATGGAAGCAGTTGGGTTTTTCCAAGAGATGATAGAGTTGGGGCTAAAACCAAATGAAATAACTTTTCTAGGTGTTCTTTCTGCCTGTAGACATGCTGGTTTAGTGGAAGAAGCATGGACTATTTTTAAGTACATGAAAACTGAATATAAAATGGAACCCCACATAGAGCATTACTATTGCATAGTTGAGCTTCTGAGTCAAGCTGGATGTTTCAAAGAGGCTGAAGAATTGATTGCTGAAATGCCTTTTGAGCCTGATCAGACCATATGGAACTCCTTGCTTGGGGCCTGTGGAACTCACAAGAAGACTGAACTGGTTAATTTTATTGCTGAACGTCTTCTAACAACCTTACCTGAAGACCCGTCAATTCTCGTTACACTTTCGAATGTTTATGCTACTTTGGAAATGTGGGATGATTCAAGAAAAATGAGAGAAGTAATCAAGAAAGTGGGCATGAAAGAAGCTGGGAAAAGCTGGATTCAGATAAAAAGTTAA 2073 0.3941 MDLHRIVSVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGCKESLGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFGSCCFTASALVDSYSNCNELDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSLGAHVDSFTFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDGKIKDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTHKKTELVNFIAERLLTTLPEDPSILVTLSNVYATLEMWDDSRKMREVIKKVGMKEAGKSWIQIKS* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0345 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Vvi18g0345 690 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 181 689 IPR046960 GO:0003723|GO:0009451
Vvi18g0345 690 NCBIfam pentatricopeptide repeat 71 101 IPR002885 -
Vvi18g0345 690 NCBIfam pentatricopeptide repeat 511 545 IPR002885 -
Vvi18g0345 690 NCBIfam pentatricopeptide repeat 173 198 IPR002885 -
Vvi18g0345 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Vvi18g0345 690 FunFam Pentatricopeptide repeat-containing protein At2g04860 258 360 - -
Vvi18g0345 690 Gene3D Tetratricopeptide repeat domain 1 126 IPR011990 GO:0005515
Vvi18g0345 690 Gene3D Tetratricopeptide repeat domain 507 690 IPR011990 GO:0005515
Vvi18g0345 690 FunFam Pentatricopeptide repeat-containing protein chloroplastic 463 558 - -
Vvi18g0345 690 FunFam Pentatricopeptide repeat-containing protein At4g08210 559 688 - -
Vvi18g0345 690 Pfam PPR repeat 410 438 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat 273 296 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat 142 166 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat 382 408 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat 173 198 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat 584 607 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat 311 338 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat 480 503 IPR002885 -
Vvi18g0345 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Vvi18g0345 690 FunFam Pentatricopeptide repeat-containing protein At4g08210 1 120 - -
Vvi18g0345 690 Pfam PPR repeat family 509 555 IPR002885 -
Vvi18g0345 690 Pfam PPR repeat family 67 115 IPR002885 -
Vvi18g0345 690 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Vvi18g0345 690 FunFam Pentatricopeptide repeat-containing protein At4g08210 130 250 - -
Vvi18g0345 690 Pfam E motif 626 687 IPR046848 -
Vvi18g0345 690 Gene3D Tetratricopeptide repeat domain 361 459 IPR011990 GO:0005515
Vvi18g0345 690 Gene3D Tetratricopeptide repeat domain 251 360 IPR011990 GO:0005515
Vvi18g0345 690 Gene3D Tetratricopeptide repeat domain 137 250 IPR011990 GO:0005515
Vvi18g0345 690 SUPERFAMILY TPR-like 45 666 IPR011990 GO:0005515
Vvi18g0345 690 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 361 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0345 Vvi-Chr18 3412345 3414417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0345 1 688 Glycoside Hydrolase AT3G49170 31.197 3.97e-109 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0345 - - vvi:100247249 1395.18