Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0342 ATGGCTCCACACCTTAGCTCGCCTCTATCATTTCTGCTGATTTTGATTGTAGTTTCATCAGTGCCACAAATGTCTGAATCGGCAAGAGTGTTCACTATAACAAACGACTGTAAAGAGACAATCTGGCCGGCGGTCTTCCCGGGCGAATACTTTGATGGTGGGGGCTTTGCCCTAAAAACAGGCCAATCAAGGGTTTTCACCGCTCCACTGAGCTGGTCTGGGCGTATATGGGGTCGATCAGGTTGCAACTTTGATAAAACTGGTAAGGGAAATTGCCAAACCGGGAGCTGCGGCGACAACATCAAGTGCTCGGCCTCAGGCAAAACACCTGCAACACTCGCAGAATTCACACTTGCAGCTCTTGATTTCTACGATGTTAGCCTTGTCGATGGCTTCAACCTACCATTAGTTGTAAAACCCATTAATGGTAAAGGAAATTGCAGCATTGCTGGCTGTGACAGCAACCTAAGGGACACTTGCCCGTCCGAGCTCGCCCTTAAATCCAGTGGGAAGACTGTAGGGTGCCGGAGTGCATGCGATGTGTTCAACACTGATGAATACTGTTGTAAAGGGCTTTATGGGAACGCCGCCACATGTGTACCTACCTCCTACTCCAAGAAGTTCAAGGAGGCTTGTCCAGCCGCATATAGTTACGCTTATGATGATCCCTCCAGCATTTTTACCTGTTCCGGCACCACCGACTATGTCATCACATTCTGCGGATCAAGGCGGCAGCCAGCGTGCACCTACCACAACAACAAACTCATCTGCAGTGGATCTAAGGGCTTAAGATCTTTGATTGGAGCATGGTGGGCTGTGATGCTCACATTTCTATTAACCATATCCGTCTCTTGA 855 0.4889 MAPHLSSPLSFLLILIVVSSVPQMSESARVFTITNDCKETIWPAVFPGEYFDGGGFALKTGQSRVFTAPLSWSGRIWGRSGCNFDKTGKGNCQTGSCGDNIKCSASGKTPATLAEFTLAALDFYDVSLVDGFNLPLVVKPINGKGNCSIAGCDSNLRDTCPSELALKSSGKTVGCRSACDVFNTDEYCCKGLYGNAATCVPTSYSKKFKEACPAAYSYAYDDPSSIFTCSGTTDYVITFCGSRRQPACTYHNNKLICSGSKGLRSLIGAWWAVMLTFLLTISVS* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0342 284 CDD TLP-PA 30 240 - -
Vvi18g0342 284 PRINTS Pathogenesis-related protein signature 88 117 IPR001938 -
Vvi18g0342 284 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Vvi18g0342 284 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vvi18g0342 284 PRINTS Pathogenesis-related protein signature 54 63 IPR001938 -
Vvi18g0342 284 PRINTS Pathogenesis-related protein signature 231 240 IPR001938 -
Vvi18g0342 284 PRINTS Pathogenesis-related protein signature 30 42 IPR001938 -
Vvi18g0342 284 Pfam Thaumatin family 35 240 IPR001938 -
Vvi18g0342 284 SMART tha2 31 241 IPR001938 -
Vvi18g0342 284 SUPERFAMILY Osmotin, thaumatin-like protein 30 241 IPR037176 -
Vvi18g0342 284 PIRSF PR5 1 281 IPR001938 -
Vvi18g0342 284 PANTHER OS03G0233200 PROTEIN 18 240 IPR001938 -
Vvi18g0342 284 Gene3D Thaumatin 30 240 IPR037176 -
Vvi18g0342 284 ProSiteProfiles Thaumatin family profile. 28 240 IPR001938 -
Vvi18g0342 284 FunFam Thaumatin-like protein 1a 29 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0342 Vvi-Chr18 3387900 3389095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0342 9 247 Receptor kinase-like Gene Family AT5G38280 47.266 5.28e-62 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0342 - - vvi:100259225 579.711