Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0331 ATGAGAGGAGTGGTTGAGCAATCTGTTGTTGAGAGGTGTGAAGACGGGGATAAGGAGAAGAAGAAAAGGCGTCGACCTCGGCGCTCTAAACAGAACGCTTCTGCTTCAGCAACATGTAGTTCAGCAAATGAAATGCGTGGGGAAGTATCAGAATGCTTGGCAAATGGTAGCATATCAAATTATGATACCACATCAATGAGTTATTCCTCATCAAAGCAGGGTGGGTTGGAGACTGATCCTTTAGACAACCATGGCTTGCACAAAGCATCTGATGTCGCTTTCACTTCTCTGCCAACAATGCATTTGAATGAACAAGCACTCCACGCGGAGGTTGGAAGCATGAACAATCAGCATATATTTCCTTCTGATCCTAGTGGAGGAATGTGTTCTAAATCTTGTCCTGTGCCCATCGATTGTGAACAGTCAATTCAGTCATTTACAAACAAAAATGTCCTTTCTCCCTATCAGGATGAGGGTTGTGCTCAGAGAAAATATTTTACTCCACACTGGTCTACTGAGGTTGTTAACGAGGCTTTAGAGAAAGGCAATGTCTTCAGAGCATCGTTTCGTGTGAATGCATACAATAGACTCGAGGCCTACTGCACAATAGAGGGAGTGAAAACAGATGTTCTCATTAGTGGACTTGCTTCTCAGAATAGAGCTGTAGAAGGAGACATTGTAGCAGTTAAAGTTGATCCTTTCTCATTATGGAGCCGGATGAAAGGGTCAACTGTGTTTCCTAACAATGCTGGTCTAACAGAAGATCATAACTTGCTTTCTGATGTTACTTTTGTTGGTGATAGCTGGAAAGGAAAAGGCAAGGTAGATGTGAATTGTGATTTTGGCCATGAAAGAAATCACTTCCTTCTTCATGACAAGGGGTTTCCCTACGAAGATAATGCTTTTTCAGCGGAGAATATTTCCCAAGAACCAATGGGCCATAATCATGTTAATGGACATCACCCCCCTGTCTTTGGTCCTTCACATGTAAGTTGTTTTGGTGAGCGAAGCAACATGGACTCATTGGAGAAGATTTGTGCTGCAATTAATTCATTCCCATCAAAACGACCAACTGGCAGTGTTGTAGCCATCATTGAGAGGTCTCCTCGTCGGGTTGCTGTTGTTGGTTTTCTTAGTGTTAAGCAGTGGCTTTCTAGCCGTGTACTTCACAGAAAGGGCACTAAAATGAACAAAACTTATTTGTCACTGTCTGATAGTGAGTACATCCAGTTGACACCAACTGACCCTAAATTTCCAAAGATGGTGGTACCTGTGAAAGGCTTGTCTGACTGCATCAAGAAACGATTGGAAGATGGTGATGCATCAATGGAAATGGAGCTTGTAGCCGCACAAATCAGTGATTGGGGGGAGGAAAGTTCTCTTCCCCTAGCTCATGTCATGCATATTTTTGGGCGAGGTGGGGAAATAGAACCAAGAATTGCTGCAATTTTATTCGAAAATGCAATTCGTCCTTCTGAATTTTCCCCTGAATCTCTTTCCTGCCTTCCACATATTCCTTGGAAGGTGCCACAGGAGGAAATTGAGAGAAGAAGAGATCTTAGAAATTTGTGCATATTTACTATTGATCCTTCTACTGCCACTGATCTTGATGATGCTCTATCAGTTGAAAAGTTATCTGGTGGCAATTTCAGAGTGGGGGTCCATATTGCTGATGCATCATATTTTGTTCTACCCGACGGAGTCTTAGACAGAGAAGCACAATCTCGATCTACAAGTGTCTATTTGCTGCAGCATAAGTTGCCAATGTTGCCACCATTGCTTTCTGAGAATTTGGGTTCACTTATTCCTGGAGTGGATAGACTTGCCTTTTCCATTTTCTGGGATATTAATCTTGCTGGGGATGTTGTAGATCGTTGGATTGGCCGTACTGTGATACAATCTTGTTGCAAGCTTTCATATGAACATGCACAGGGCATTATTGATGGAATGTTTGATGTGGAGGGTTCTAAAATTCTGGGAAATGACTGTCCCCAATTGCATGGCCATTTTAAATTGCCTGAAGTGATAAGATCTATTAAATATCTTTATGCAATTTCCAAAACTTTGAGGGCCAACAGGTTTAATGATGGCGCGCTATTGCTGGATGGCGCCAAAGTTATTCTCTTGTTTGATGAACATGGAGTTCCATATGACAGCACATTTTCTGTACGGAAGGACTCCAATTCTCTTGTTGAGGAGTTTATGCTTTTGGCCAACAAGACAGCTGCAGAAATCATATCTAGAGCTTTTCCTGATAATGCATTATTGAGAAGGCACCCTGAGCCTAATTTGCGAAAGCTTAGGGAGTTTGAAGCATTTTGTAGTAAGCATGGTTTAGAATTGGACACCTCTTCTTCTGGTCAGTTCAATCATTCGCTGGAGCAAATTAGGGAAAAGCTCAAAAATGACTCTGTGTTGTTTGATATTCTCCTTTCATATGCTTCGAGGCCAATGCAATTGGCAACATACTTTTGCAGTGGTGACTTAAAAGACAACAAAAACGAGTGGTCTCATTATGCCCTGGCTGTTCCTCTTTACACCCATTTTACATCCCCACTGCGTCGATATCCTGATATCATAGTACATCGGACATTGGCTGCAGCTATAGAAGCTGAGGAATTATATCTGAAGCATGGGGCAAAAATACAAAAGGTGAAGAATGGGGAGGAAATGAGAAGATGTTTCACTGGTATTCACTTTGATAAGAATGCTGCAGAATCTGTAGAAGGTCAGAAGGCACTATCAGTTGCAGCATCAAAGCACCGGCTTCCATGCACAGAAATACTTGCAGATGTTGTTGCTTATTGCAATGAGAGAAAGCTGGCTAGTAGGCATGCTAAGGATGGCTGTGAGAGACTCTATATGTGGGTTCTGCTGAAGAAGAAAGAGGTTTTATTGTCGGAAGCTAGAGTTTTGGGTCTGGGTCCAAGATTCATGTCCATTTATATTCATAAGCTTGGTATTGAGCGACGCATTTACTATGATGAAGTCGAAGGCTTGACAGTAGAATGGCTTGATGCTACATCCACATTGGTAGTCAATTTATCCACAAATAAATGTTCTCGTTGGAGGGGGAATCAAGGTAAGTACAGGCAACTTGAAGATGTTGCATGGGTTATTCGTCCATGCAACTTGAAGCAGGAGGTGGATGCGTTTGGAGACACTGTTAATGAGTGGGGTGCAACAACAGTGGGAAGAGATGCTAGTGTTGCATCCTTGCGCCCAAGGTGCATGTCTGAATCTGGTGTTCCAGATGCTAATGAAATTGACCCTTTATTTTTTCCTCTCACAGTTCGCACCCTTTCAACAATTCCAGTAGTTCTTCATGCTGTTGGCGGTGATGATGGACCTCTTGATATAGGGGCAAGGCTGTACATGAACTCATATTATGGTTGA 3396 0.4243 MRGVVEQSVVERCEDGDKEKKKRRRPRRSKQNASASATCSSANEMRGEVSECLANGSISNYDTTSMSYSSSKQGGLETDPLDNHGLHKASDVAFTSLPTMHLNEQALHAEVGSMNNQHIFPSDPSGGMCSKSCPVPIDCEQSIQSFTNKNVLSPYQDEGCAQRKYFTPHWSTEVVNEALEKGNVFRASFRVNAYNRLEAYCTIEGVKTDVLISGLASQNRAVEGDIVAVKVDPFSLWSRMKGSTVFPNNAGLTEDHNLLSDVTFVGDSWKGKGKVDVNCDFGHERNHFLLHDKGFPYEDNAFSAENISQEPMGHNHVNGHHPPVFGPSHVSCFGERSNMDSLEKICAAINSFPSKRPTGSVVAIIERSPRRVAVVGFLSVKQWLSSRVLHRKGTKMNKTYLSLSDSEYIQLTPTDPKFPKMVVPVKGLSDCIKKRLEDGDASMEMELVAAQISDWGEESSLPLAHVMHIFGRGGEIEPRIAAILFENAIRPSEFSPESLSCLPHIPWKVPQEEIERRRDLRNLCIFTIDPSTATDLDDALSVEKLSGGNFRVGVHIADASYFVLPDGVLDREAQSRSTSVYLLQHKLPMLPPLLSENLGSLIPGVDRLAFSIFWDINLAGDVVDRWIGRTVIQSCCKLSYEHAQGIIDGMFDVEGSKILGNDCPQLHGHFKLPEVIRSIKYLYAISKTLRANRFNDGALLLDGAKVILLFDEHGVPYDSTFSVRKDSNSLVEEFMLLANKTAAEIISRAFPDNALLRRHPEPNLRKLREFEAFCSKHGLELDTSSSGQFNHSLEQIREKLKNDSVLFDILLSYASRPMQLATYFCSGDLKDNKNEWSHYALAVPLYTHFTSPLRRYPDIIVHRTLAAAIEAEELYLKHGAKIQKVKNGEEMRRCFTGIHFDKNAAESVEGQKALSVAASKHRLPCTEILADVVAYCNERKLASRHAKDGCERLYMWVLLKKKEVLLSEARVLGLGPRFMSIYIHKLGIERRIYYDEVEGLTVEWLDATSTLVVNLSTNKCSRWRGNQGKYRQLEDVAWVIRPCNLKQEVDAFGDTVNEWGATTVGRDASVASLRPRCMSESGVPDANEIDPLFFPLTVRTLSTIPVVLHAVGGDDGPLDIGARLYMNSYYG* 1132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0331 1131 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1106 IPR028591 GO:0000175|GO:0034427
Vvi18g0331 1131 MobiDBLite consensus disorder prediction 1 42 - -
Vvi18g0331 1131 SMART RNB_2 517 871 IPR001900 GO:0003723|GO:0004540
Vvi18g0331 1131 Pfam RNB domain 517 869 IPR001900 GO:0003723|GO:0004540
Vvi18g0331 1131 SUPERFAMILY Nucleic acid-binding proteins 479 961 IPR012340 -
Vvi18g0331 1131 Gene3D - 156 257 - -
Vvi18g0331 1131 FunFam DIS3-like exonuclease 2 391 475 - -
Vvi18g0331 1131 FunFam DIS3-like exonuclease 2 155 259 - -
Vvi18g0331 1131 Pfam Rrp44-like cold shock domain 166 239 IPR033771 -
Vvi18g0331 1131 Gene3D - 393 475 - -
Vvi18g0331 1131 MobiDBLite consensus disorder prediction 7 21 - -
Vvi18g0331 1131 ProSitePatterns Ribonuclease II family signature. 838 862 IPR022966 -
Vvi18g0331 1131 SUPERFAMILY Nucleic acid-binding proteins 358 489 IPR012340 -
Vvi18g0331 1131 PANTHER RIBONUCLEASE 58 1128 - -
Vvi18g0331 1131 SUPERFAMILY Nucleic acid-binding proteins 163 367 IPR012340 -
Vvi18g0331 1131 Pfam Dis3-like cold-shock domain 2 (CSD2) 408 487 IPR041505 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0331 Vvi-Chr18 3283233 3291512 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0331 K18758 - vvi:100260740 2244.16