Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0311 ATGGCTCCTCCTCCTTACCCCTTACCTTCACTTCCATTTCTACTACTCATCCTCACCGTTCTTGGTCTTCCACGGTCATCATCTACGTTGATGCCAGGCTTCCGTCGCCAGCAACTGGAAACCGGGTTCCAGGTCGGCCTAAGACATATTGATGCTGGTCGTAACTTCACGAGACTTCAACTCATCCAAAGAGGAATCAACCGCGGGAGGCAGCGGCTGCAGAGGATGAGTGGAATGGCAACAACTGCAGAGCGTAACGGTTTCCAAGCCCCGGTTCATGTTGGAGATGGAGAGTTCGTAGTGAACTTAATGATCGGAACACCCCCTGTGCCTTTCCCGGCGATAATGGATACGGGAAGCGACTTGATATGGACGCAGTGCAATCCATGCAAGTTGTGTTTCCAGCAATCGACGCCCGTTTTCAATCCGAAGCGGTCTTCCACCTTCTCTAATATTTCATGTTCCAGTAAATTATGCAAGGGTGTAAAGCCTTCCAAGTGTGATAAATCTTGCGAGTATAGATATACTTATGGAGACGAGTCGTCCACGGAAGGCTTCATGGCAATGGACACTATCACTTTTGGGGAGTTACCGAAACGAGTTTCAATCCCTCGTATCGGGTTCGGGTGTGGGGTTAACAACCGGGCTACAGGGATGGATCAGACTGCAGGGCTGCTGGGTCTCGGGCGGGGAGTTCTGTCGCTAGTTTCACAGCTTGGTACACAGAAATTCTCGTATTGTTTAACCTCGATTCATGAGAATAAAACGAGCAGTCTTTTGTTTGGATCTCTAGCTTATTCGAACTTCAACCCTGGAAAAATTCCAAGGACCCCATTGATTCAAAACCCATTCCTGCCATCCTACTACTATCTGGCTCTTAAAGGCATCACAGTCGGCTACACTCTTTTACCCATACCCGAATTCGCATTCCAATTGGGAAAGGATGGGAGCGGCGGCATGATCCTAGATTCTGGGACAACTATAACTTATTTACAGGAGGATGCTTTTGATGTGCTAAAGAATGCCTTCATCTCCCAAACGGAGCTTCAGGTTGCCAATTCCAGCACCACCGGACTTGACCTTTGCTTTCATTTGCCAGTGAAAAATGCAGCAGAGGTCAAGGTGCCAAAGCTGATCTTTCACTTCAAGGGGTTAGATTTAGCGCTGCCAGTGGAGAATTATATGGTATCAGATCCTGAAATGGGATTGATATGCTTGGCCATTGATGCCACGGGCAGTCTATCAATTTTTGGGAACATTCAGCAGCAGAACATGTTGGTCCTCCATGATCTTAAGAAGTCGACTTTATCCTTAGTTCCCACCCAATGTGATAAGGTGTAA 1341 0.4765 MAPPPYPLPSLPFLLLILTVLGLPRSSSTLMPGFRRQQLETGFQVGLRHIDAGRNFTRLQLIQRGINRGRQRLQRMSGMATTAERNGFQAPVHVGDGEFVVNLMIGTPPVPFPAIMDTGSDLIWTQCNPCKLCFQQSTPVFNPKRSSTFSNISCSSKLCKGVKPSKCDKSCEYRYTYGDESSTEGFMAMDTITFGELPKRVSIPRIGFGCGVNNRATGMDQTAGLLGLGRGVLSLVSQLGTQKFSYCLTSIHENKTSSLLFGSLAYSNFNPGKIPRTPLIQNPFLPSYYYLALKGITVGYTLLPIPEFAFQLGKDGSGGMILDSGTTITYLQEDAFDVLKNAFISQTELQVANSSTTGLDLCFHLPVKNAAEVKVPKLIFHFKGLDLALPVENYMVSDPEMGLICLAIDATGSLSIFGNIQQQNMLVLHDLKKSTLSLVPTQCDKV* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0311 446 CDD pepsin_A_like_plant 98 443 IPR034161 -
Vvi18g0311 446 FunFam Probable aspartic protease At2g35615 79 262 - -
Vvi18g0311 446 PRINTS Pepsin (A1) aspartic protease family signature 320 331 IPR001461 GO:0004190|GO:0006508
Vvi18g0311 446 PRINTS Pepsin (A1) aspartic protease family signature 257 270 IPR001461 GO:0004190|GO:0006508
Vvi18g0311 446 PRINTS Pepsin (A1) aspartic protease family signature 105 125 IPR001461 GO:0004190|GO:0006508
Vvi18g0311 446 Gene3D Acid Proteases 263 446 IPR021109 -
Vvi18g0311 446 ProSiteProfiles Peptidase family A1 domain profile. 99 439 IPR033121 -
Vvi18g0311 446 SUPERFAMILY Acid proteases 92 444 IPR021109 -
Vvi18g0311 446 Pfam Xylanase inhibitor C-terminal 289 437 IPR032799 -
Vvi18g0311 446 Gene3D Acid Proteases 78 262 IPR021109 -
Vvi18g0311 446 PANTHER OS07G0603500 PROTEIN-RELATED 59 443 - -
Vvi18g0311 446 FunFam Aspartyl protease family protein 263 446 - -
Vvi18g0311 446 Pfam Xylanase inhibitor N-terminal 99 263 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0311 Vvi-Chr18 3102029 3103369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0311 97 446 Miscellaneous Gene Families AT1G44130 27.154 3.28e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0311 - - vvi:104882467 857.44