Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0303 ATGGCGACGTCGCATTTTGCAGATCCGTCAATAGCGATGTTATCGACCAGCGGAGGTGACACCGTCAAGCTTTTCGACGTCTCCTTAGGGCTGGGCGACCCCTGCACTCTGAGCTACTCGCCTTCACCGGGTCACCATGTCTATTCAGTCAAGTGGAGTCACACCAATTTGGTTGTGGCAAGTGCTGGAGAAGACAAGAAGATCTCTCTATGGCGGAAAAACGGACAAATTATCGGAACTATTCCAGTTTTTGGGAGTGAAAGCGGAGAGAACATCGAGGAATCTATATTTGCTATCAATTTTAGCAACAAGGGATCCAGGTACATATGTTCTGGGGGAAGCGGTAAAGTTGTAAGAATATGGGATTTGCGGAGGAGATGTTGCATTAAGTGGTTGAGGGGTCATACTGATGTGATAACTGGGGCAATGTACAATTACAAAGATGAGCACTTGGCTTCCATTAGTTTAAATGGGGTTCTTATTCTACACAACCTTGCATCTGGTGCAAAGGTGGCTGAACTCAAGGACCCCAATCAACAGGTATTAAGAGTGCTTGATTATTCACGAATTAGTCGACACCTTTTGGTGACTGCTGGTGATGATGGGTCAATACATCTGTGGGATACAACTGGTCACAGCCCAAAGGTTTCTTGGTTGAAGCAGCACTCTGCACCAACTGCTGGGGTTACCTTCTCACCCTCCAATGATAAGATGATTGCTAGTGTAGGTCTAGATAAAAAGTTGTATACTTTTGACAGAGGGTCCAGAAGACCTTCATTTTGCATTCCTTATGAGATGCCATTCTCTTCATTGGCATTTAGAGATGATGGCTGGACTCTAGCAGCTGGAACAAGTCATGGCCAAGTGGTATTCTATGATGTCCGTGGAAAACCACAGCCTTTCTCCATTCTCTGTGCTTATGGTAATTCAGAGGCTGTCACAAGTTTATGCTGGCAAAGATCAAAACCTGTAATTGTAGATGAAAGTAATTGCAGCCCTGAGATTGCTCTTATGGGAGGTGCTACCGAAGATTCAGTCATTATTCCTGACCCACTTCCGTCTGTAACATCATCAAGTCTTTCACTATCCATGGCGTTACCTGGTTCTCAAAATCCTGGCCGCATAGGTCCGTCAACAGAAGCATCTTCACTTACTGTAACCAGTGGTGGTTCTATGTCAAGCTCGCTCTGTTTGTCTATGGCAGAGGAAACACCGAGTAGAAGTCATCTGCGGCTAGGTGGAACATTGGCAAAATTACGTGCTCCTCATTCTGGTTATACCTTCAAGGACGATATGGAGGTGTTTTCTCCTCTCGTGGATGTTCAACCACTTACACCTACACTTGATAAGCTTTGGGATGATCATGAAGGAGCAAAGAAAGATTATCTACCTTTTGATAAGAAGCCTTCGTCTCTGTTTTCTTCACCTAGTAGGAGATCCTCTATAGCAGAGGGTGAGGGCAATAATCATCCAATATTCAATTGGAAATCCAATTCAACTTCCAGGCAGGACACTCACGCTTCTCTTACAGCACCGGGATCATCTACTACTTCATCTTTCAAAAGTGAAGACTCTTCCATCACTCCTCCAAAAGCCTGGGGTGGTGAGAGATTTTCTGATAAATTTACCCACCACCGTCAGCCCACACTGTCTCGCTTTGGGATGTTGGCAGCTAGTGGTCTAGCATCAGGGTCAATGTTTTCTGGATTACAAGAGCTATGGTCATCAACAAGTCATATGAGTGGGAGCTCCTCGTCAAATCAAAACCTGACTTTTGGAAATTTGCGTGCCAAAGATTTCTCTTTTAATCAGGAAACTCCACTGGGAGTCCCAGAAAATTTCCCTTCTATTTCCGTATCTCTGCCTCTAGATACAAAAGCTGTCACCAGACAGGCTAACCTTGAACTGCCAGGATCACCAGCATCCTTGACCCTCCCACGAAGATTTTCCACTTATGCCGAGAGAATAAGCACTACCTTATCCTCCAGTGATGGGACCTCTCCTGTTGGTTCACCAAAAATAAAGAAAACAGGAGCTGAAACCAGAGCAGAAATTTTGAATGGCTTATTTAATTCTGTTACATCAGCTGCCTCAGAAGCAGGGACTCATCCAATGGGAGGAACATCACTATCCCAGAAAGGTCCTTCTCAGTCAGATACCCAGCAGGGAACCTCATTTACCCTTCAGATGTTTCAAAGCACCCTTGAAGAAACCCTTGATTCCTTTCAGAAATCCATACACAAAGATATGAGGAACCTTCACATCGAAATTCTGAGACAATTTCATATTCAAGAGACAGAAATCTCAAGTGTGGCAAGCTCGATTTTGGAAAACCAAGCTGAGCTGATGAAAGAAATCCAGTCTCTCCGGAAAGAGAATCAGCAACTCCGCCAATTGCTTTGA 2403 0.4461 MATSHFADPSIAMLSTSGGDTVKLFDVSLGLGDPCTLSYSPSPGHHVYSVKWSHTNLVVASAGEDKKISLWRKNGQIIGTIPVFGSESGENIEESIFAINFSNKGSRYICSGGSGKVVRIWDLRRRCCIKWLRGHTDVITGAMYNYKDEHLASISLNGVLILHNLASGAKVAELKDPNQQVLRVLDYSRISRHLLVTAGDDGSIHLWDTTGHSPKVSWLKQHSAPTAGVTFSPSNDKMIASVGLDKKLYTFDRGSRRPSFCIPYEMPFSSLAFRDDGWTLAAGTSHGQVVFYDVRGKPQPFSILCAYGNSEAVTSLCWQRSKPVIVDESNCSPEIALMGGATEDSVIIPDPLPSVTSSSLSLSMALPGSQNPGRIGPSTEASSLTVTSGGSMSSSLCLSMAEETPSRSHLRLGGTLAKLRAPHSGYTFKDDMEVFSPLVDVQPLTPTLDKLWDDHEGAKKDYLPFDKKPSSLFSSPSRRSSIAEGEGNNHPIFNWKSNSTSRQDTHASLTAPGSSTTSSFKSEDSSITPPKAWGGERFSDKFTHHRQPTLSRFGMLAASGLASGSMFSGLQELWSSTSHMSGSSSSNQNLTFGNLRAKDFSFNQETPLGVPENFPSISVSLPLDTKAVTRQANLELPGSPASLTLPRRFSTYAERISTTLSSSDGTSPVGSPKIKKTGAETRAEILNGLFNSVTSAASEAGTHPMGGTSLSQKGPSQSDTQQGTSFTLQMFQSTLEETLDSFQKSIHKDMRNLHIEILRQFHIQETEISSVASSILENQAELMKEIQSLRKENQQLRQLL* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0303 800 Pfam WD domain, G-beta repeat 38 71 IPR001680 GO:0005515
Vvi18g0303 800 Coils Coil 772 799 - -
Vvi18g0303 800 MobiDBLite consensus disorder prediction 698 722 - -
Vvi18g0303 800 ProSiteProfiles Trp-Asp (WD) repeats profile. 194 208 IPR001680 GO:0005515
Vvi18g0303 800 MobiDBLite consensus disorder prediction 366 386 - -
Vvi18g0303 800 SUPERFAMILY WD40 repeat-like 17 325 IPR036322 GO:0005515
Vvi18g0303 800 FunFam Protein NEDD1 7 181 - -
Vvi18g0303 800 Gene3D - 6 186 IPR015943 GO:0005515
Vvi18g0303 800 MobiDBLite consensus disorder prediction 471 538 - -
Vvi18g0303 800 PANTHER PROTEIN NEDD1 6 800 IPR044621 GO:0010968|GO:0140496
Vvi18g0303 800 SMART WD40_4 212 252 IPR001680 GO:0005515
Vvi18g0303 800 SMART WD40_4 255 293 IPR001680 GO:0005515
Vvi18g0303 800 SMART WD40_4 32 72 IPR001680 GO:0005515
Vvi18g0303 800 SMART WD40_4 167 208 IPR001680 GO:0005515
Vvi18g0303 800 SMART WD40_4 125 164 IPR001680 GO:0005515
Vvi18g0303 800 SMART WD40_4 74 122 IPR001680 GO:0005515
Vvi18g0303 800 MobiDBLite consensus disorder prediction 491 526 - -
Vvi18g0303 800 Gene3D - 187 402 IPR015943 GO:0005515
Vvi18g0303 800 FunFam Protein NEDD1 182 402 - -
Vvi18g0303 800 MobiDBLite consensus disorder prediction 657 676 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0303 Vvi-Chr18 2950570 2959283 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0303 58 252 Miscellaneous Gene Families AT5G08390 23.077 6.84e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0303 K16547 - vvi:100250597 1502.26