Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0302 ATGAGTGCTTATTTTGTTGGCCTCCTTGTTCCTCTGGTATTTACTCTCCTCTTTCGGAATGCTAAGAGCGGAAAGAAACGGGGCTTGCCTGTTGATGTTGGAGGGGAACCTGGCTATGCAATTCGAAACCGTAGGTTTACTTCCCCAGTAAAATCAGCCTGGGAAGGTATTTCAACACTTGCAGAACTTTTTGAGCAGTTATGCAAGCAGCACCGAGACAAACACTTACTTGGTACTCGGAAGTTGATTTCAAGGGAGACAGAAGTAACTGCAGATGGAAGGTCCTTTGAGAAAGTTCATCTGGGAGACTATGAGTGGCTAACCTATGGCAAAACGTTTGAAGTGATCTGCAGTTTTGCTTCTGGTTTGGCACAACTTGGTCATAAAAGAGAAGAGCGTGCAGCAATCTTTGCTGATACACGAGAAGAATGGTTTATTGCATTGCAGGCTTGCTTTAGGCGCAACATCACTGTTGTGACCATATATGCATCTTTGGGGGAGGAGGCTCTATGCCACTCATTGAACGAGACAGAGGTCACAACTGTAATTTGTGGGCACAAAGAACTGAAAAAAATTATTGATATAAGTGGACAACTTGACACTCTGAAACGTGTAATATGTATGGATGATTCAACCCTGTGTAACACCTCATTGGCTGAGGGTGGTGGTAGCTGGACAATCACTTCATTTTCTGATGTGGAGAAACTTGGCAGAGAGAATCCTGTTGATGCGGATTTACCTCTTTCAGCTGATATTGCAGTCATAATGTATACAAGTGGGAGTACTGGATTGCCTAAGGGTGTGATGATGACTCATGGAAATGTCCTAGCCACAGTTTCTGCTGTCATGACAATTGTTCCTGGCCTTGGAAAGGTGGAGGATGTTTATTTAGCATATCTACCCATGGCTCATATCCTTGAATTGGCTGCTGAGAACGTAGTAGCTGCTATTGGAGGTGCAATAGGGTATGGATCCCCTTTGACCCTCACTGATACATCAAGCAGGATAAAAAGAGGAACAAAGGGGGATGCCTCTGCTCTGGTACCAACAGTGATGACGGCTGTCCCAGCCATTCTTGATCGTGTTCGAGATGGTGTGCGCAAGAAGGTAGATGCAAAGGGTGGTCTAGCCAAGAAATTGTTTGATTTAGCATATGCACGTAGGTTGTCAGCAATCAATGGCAGTTGGTTTGGGGCTTGGGGTCTAGAAAGCCTTCTATGGAACTTCCTTGTGTTCAGAAAGGTCCGAGCTATTCTGGGTGGTCGAATCCGCTTTTTGCTATGTGGAGGGGCTCCTCTTTCTAGTGATACTCAAAGATTCATCAATATTTGTCTTGGTGCTCCAATAGTTCAAGGGTATGGCCTGACAGAGAGTTGTGCTGGTGGTACATTTTCCGAGTATGATGATACATCTGTTGGTCGTGTTGGTGCTCCACTTCCTTGCTCATTTATTAAGTTGATAAATTGGCCTGAGGGTGGGTATTTAACAAGTGATAAACCAATGCCTCGAGGAGAAATAGTCATTGGTGGTCCAAATGTTACTGTTGGATATTTCAAAAATGAAGAGAAAACAAATGAAGTTTACAAGGTTGATGAGAGAGGAATGAGGTGGTTTTACACCGGGGACATAGGGCAGTTTCATGCTGATGGTTGCCTTGAAATAATTGACCGTAGAAAGGACATAGTTAAACTTCAGCATGGAGAATATTTATCTCTAGGAAAGGTTGAGGCTGCTCTCATCGTGAGCCCCTATGTCGACAATATTATGTTGCATGCTAATCCTTTTCGTAATTACTGTGTGGCTCTTGTGGTGGCTTCACAGCCGGCAGTGGAAGATTGGGCTTTGAAGCAAGGAATAGCTTTCATTGATTTTTCAGACTTATGCCAGAAAGAAGAAACTGTGAAGGAAGTACATGCATCACTTGTGAAGGCAGCAAAGCAGGCACGTCTGGAGAAGTTTGAGATCCCTGCCAAGATCAAATTGCTTCCTGATGCATGGACTCCTGAAACTGGGCTGGTCACTGCAGCTCTCAAGATCAAGAGAGATGTCATTAGGAAGAGATTCTCTGAAGACCTCGCAAGGTTATATACATGA 2094 0.4417 MSAYFVGLLVPLVFTLLFRNAKSGKKRGLPVDVGGEPGYAIRNRRFTSPVKSAWEGISTLAELFEQLCKQHRDKHLLGTRKLISRETEVTADGRSFEKVHLGDYEWLTYGKTFEVICSFASGLAQLGHKREERAAIFADTREEWFIALQACFRRNITVVTIYASLGEEALCHSLNETEVTTVICGHKELKKIIDISGQLDTLKRVICMDDSTLCNTSLAEGGGSWTITSFSDVEKLGRENPVDADLPLSADIAVIMYTSGSTGLPKGVMMTHGNVLATVSAVMTIVPGLGKVEDVYLAYLPMAHILELAAENVVAAIGGAIGYGSPLTLTDTSSRIKRGTKGDASALVPTVMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDLAYARRLSAINGSWFGAWGLESLLWNFLVFRKVRAILGGRIRFLLCGGAPLSSDTQRFINICLGAPIVQGYGLTESCAGGTFSEYDDTSVGRVGAPLPCSFIKLINWPEGGYLTSDKPMPRGEIVIGGPNVTVGYFKNEEKTNEVYKVDERGMRWFYTGDIGQFHADGCLEIIDRRKDIVKLQHGEYLSLGKVEAALIVSPYVDNIMLHANPFRNYCVALVVASQPAVEDWALKQGIAFIDFSDLCQKEETVKEVHASLVKAAKQARLEKFEIPAKIKLLPDAWTPETGLVTAALKIKRDVIRKRFSEDLARLYT* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0302 697 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 42 696 - -
Vvi18g0302 697 Pfam AMP-binding enzyme 97 565 IPR000873 -
Vvi18g0302 697 ProSitePatterns Putative AMP-binding domain signature. 255 266 IPR020845 -
Vvi18g0302 697 Gene3D - 50 557 IPR042099 -
Vvi18g0302 697 SUPERFAMILY Acetyl-CoA synthetase-like 56 695 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0302 Vvi-Chr18 2929342 2939364 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0302 148 696 Acyl Lipid Metabolism Gene Families AT1G77590 80.146 0.0 924
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0302 K01897 - vvi:100265978 1380.16